Debian 12 (Bookworm) native package

srst2

Short Read Sequence Typing for Bacterial Pathogens

Packages / Debian 12 (Bookworm) / science / srst2

Package: srst2 (0.2.0-9)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [katholt.github.io]

Short Read Sequence Typing for Bacterial Pathogens

Other Packages Related to srst2:

dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [bowtie2]
ultrafast memory-efficient short read aligner
dep: [cd-hit]
suite of programs designed to quickly group sequences
dep: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats
dep: [python3-scipy]
scientific tools for Python 3
dep: [python3-biopython]
Python3 library for bioinformatics

rec: [python3-rpy2]
Python3 interface to the GNU R language and environment (version 2)

Download srst2

Architecture	Package Size	Installed Size	Files
amd64	60 KiB	255 KiB	[list of files]

Caminhos de arquivo do pacote (40)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/csv_to_gene_db
/usr/bin/get_all_vfdb
/usr/bin/get_genus_vfdb
/usr/bin/getmlst
/usr/bin/slurm_srst2
/usr/bin/srst2
/usr/bin/VFDB_cdhit_to_csv
/usr/bin/VFDBgenus
/usr/share/doc-base/srst2.srst2
/usr/share/doc/srst2/changelog.Debian.gz
/usr/share/doc/srst2/changelog.gz
/usr/share/doc/srst2/copyright
/usr/share/doc/srst2/example.txt.gz
/usr/share/doc/srst2/README.html
/usr/share/doc/srst2/tests/test_slurm_srst2.py.gz
/usr/share/doc/srst2/tests/test_srst2.py.gz
/usr/share/man/man1/csv_to_gene_db.1.gz
/usr/share/man/man1/get_all_vfdb.1.gz
/usr/share/man/man1/get_genus_vfdb.1.gz
/usr/share/man/man1/getmlst.1.gz
/usr/share/man/man1/slurm_srst2.1.gz
/usr/share/man/man1/srst2.1.gz
/usr/share/man/man1/VFDB_cdhit_to_csv.1.gz
/usr/share/man/man1/VFDBgenus.1.gz
/usr/share/python3/runtime.d/srst2.rtupdate
/usr/share/srst2/analyseSRST2.py
/usr/share/srst2/consensus_alignment.py
/usr/share/srst2/database_clustering/align_plot_tree_min3.py
/usr/share/srst2/database_clustering/cdhit_to_csv.py
/usr/share/srst2/database_clustering/csv_to_gene_db.py
/usr/share/srst2/database_clustering/get_all_vfdb.sh
/usr/share/srst2/database_clustering/get_genus_vfdb.sh
/usr/share/srst2/database_clustering/VFDB_cdhit_to_csv.py
/usr/share/srst2/database_clustering/VFDBgenus.py
/usr/share/srst2/getmlst.py
/usr/share/srst2/__init__.py
/usr/share/srst2/qsub_srst2.py
/usr/share/srst2/slurm_srst2.py
/usr/share/srst2/srst2.py
/usr/share/srst2/version.py

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 12 (Bookworm) no navegador Construir uma imagem que inclui srst2

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0.2.0-9	bookworm / main	amd64	Debian 12 · main · amd64	60 KiB	255 KiB	pool/main/s/srst2/srst2_0.2.0-9_amd64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.2.0-9 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 6b7ce4054edc9075738c19a38e70426f9e45d899438b955ce2354ef7625e7570

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '6b7ce4054edc9075738c19a38e70426f9e45d899438b955ce2354ef7625e7570' 'srst2_0.2.0-9_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified