Linux workstation

Debian 12 (Bookworm) native package

vienna-rna

RNA sequence analysis

Packages / Debian 12 (Bookworm) / non-free/science / vienna-rna

Package: vienna-rna (2.5.1+dfsg-1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.tbi.univie.ac.at]

RNA sequence analysis

Other Packages Related to vienna-rna:

  • dep: [libc6] (>= 2.35)

    GNU C Library: Shared libraries

  • dep: [libdlib19.1] (>= 19.24+dfsg)

    C++ toolkit for machine learning and computer vision - library

  • dep: [libgcc-s1] (>= 3.3.1)

    GCC support library

  • dep: [libgomp1] (>= 4.9)

    GCC OpenMP (GOMP) support library

  • dep: [libgsl27] (>= 2.7.1)

    GNU Scientific Library (GSL) -- library package

  • dep: [libgslcblas0] (>= 2.7.1)

    GNU Scientific Library (GSL) -- blas library package

  • dep: [liblapack3]

    Library of linear algebra routines 3 - shared version

  • dep: liblapack.so.3

    Package not available

  • dep: [libmpfr6] (>= 3.1.3)

    multiple precision floating-point computation

  • dep: [libstdc++6] (>= 11)

    GNU Standard C++ Library v3

  • rec: [readseq]

    Conversion between sequence formats

Download vienna-rna

ArchitecturePackage SizeInstalled SizeFiles
amd643.0 MiB87 MiB[list of files]
arm642.7 MiB89 MiB[list of files]

Package file paths (75)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/AnalyseDists
  • /usr/bin/AnalyseSeqs
  • /usr/bin/b2ct
  • /usr/bin/ct2db
  • /usr/bin/Kinfold
  • /usr/bin/popt
  • /usr/bin/RNA2Dfold
  • /usr/bin/RNAaliduplex
  • /usr/bin/RNAalifold
  • /usr/bin/RNAcofold
  • /usr/bin/RNAdistance
  • /usr/bin/RNAdos
  • /usr/bin/RNAduplex
  • /usr/bin/RNAeval
  • /usr/bin/RNAfold
  • /usr/bin/RNAheat
  • /usr/bin/RNAinverse
  • /usr/bin/RNALalifold
  • /usr/bin/RNALfold
  • /usr/bin/RNAlocmin
  • /usr/bin/RNAmultifold
  • /usr/bin/RNApaln
  • /usr/bin/RNAparconv
  • /usr/bin/RNApdist
  • /usr/bin/RNAPKplex
  • /usr/bin/RNAplex
  • /usr/bin/RNAplfold
  • /usr/bin/RNAplot
  • /usr/bin/RNApvmin
  • /usr/bin/RNAsnoop
  • /usr/bin/RNAsubopt
  • /usr/bin/RNAup
  • /usr/share/doc/vienna-rna/changelog.Debian.gz
  • /usr/share/doc/vienna-rna/changelog.gz
  • /usr/share/doc/vienna-rna/copyright
  • /usr/share/doc/vienna-rna/NEWS.gz
  • /usr/share/doc/vienna-rna/README.Debian
  • /usr/share/doc/vienna-rna/README.md.gz
  • /usr/share/doc/vienna-rna/TODO.Debian.gz
  • /usr/share/info/RNAlib.info.gz
  • /usr/share/lintian/overrides/vienna-rna
  • /usr/share/man/man1/AnalyseDists.1.gz
  • /usr/share/man/man1/AnalyseSeqs.1.gz
  • /usr/share/man/man1/b2ct.1.gz
  • /usr/share/man/man1/ct2b.1.gz
  • /usr/share/man/man1/ct2db.1.gz
  • /usr/share/man/man1/dpzoom.1.gz
  • /usr/share/man/man1/Kinfold.1.gz
  • /usr/share/man/man1/popt.1.gz
  • /usr/share/man/man1/RNA2Dfold.1.gz
  • /usr/share/man/man1/RNAaliduplex.1.gz
  • /usr/share/man/man1/RNAalifold.1.gz
  • /usr/share/man/man1/RNAcofold.1.gz
  • /usr/share/man/man1/RNAdistance.1.gz
  • /usr/share/man/man1/RNAdos.1.gz
  • /usr/share/man/man1/RNAduplex.1.gz
  • /usr/share/man/man1/RNAeval.1.gz
  • /usr/share/man/man1/RNAfold.1.gz
  • /usr/share/man/man1/RNAheat.1.gz
  • /usr/share/man/man1/RNAinverse.1.gz
  • /usr/share/man/man1/RNALalifold.1.gz
  • /usr/share/man/man1/RNALfold.1.gz
  • /usr/share/man/man1/RNAlocmin.1.gz
  • /usr/share/man/man1/RNAmultifold.1.gz
  • /usr/share/man/man1/RNApaln.1.gz
  • /usr/share/man/man1/RNAparconv.1.gz
  • /usr/share/man/man1/RNApdist.1.gz
  • /usr/share/man/man1/RNAPKplex.1.gz
  • /usr/share/man/man1/RNAplex.1.gz
  • /usr/share/man/man1/RNAplfold.1.gz
  • /usr/share/man/man1/RNAplot.1.gz
  • /usr/share/man/man1/RNApvmin.1.gz
  • /usr/share/man/man1/RNAsnoop.1.gz
  • /usr/share/man/man1/RNAsubopt.1.gz
  • /usr/share/man/man1/RNAup.1.gz

Field source: Debian 12 (Bookworm) non-free amd64 revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browserBuild an image that includes vienna-rna

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
2.5.1+dfsg-1bookworm / non-freeamd64Debian 12 · non-free · amd643.0 MiB87 MiBpool/non-free/v/vienna-rna/vienna-rna_2.5.1+dfsg-1_amd64.deb
2.5.1+dfsg-1bookworm / non-freearm64Debian 12 · non-free · arm642.7 MiB89 MiBpool/non-free/v/vienna-rna/vienna-rna_2.5.1+dfsg-1_arm64.deb

Field source: Debian 12 (Bookworm) non-free amd64 revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.5.1+dfsg-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 5b30d53a044ed2defebf5c5319003a035c8b157417343faeea3bc0101c51f2af

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '5b30d53a044ed2defebf5c5319003a035c8b157417343faeea3bc0101c51f2af' 'vienna-rna_2.5.1+dfsg-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) non-free amd64 revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d

2.5.1+dfsg-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 6a00f2af569e4e69660baef1fc9c08b1c2868c96ecae2fd5614c0c3568db7252

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '6a00f2af569e4e69660baef1fc9c08b1c2868c96ecae2fd5614c0c3568db7252' 'vienna-rna_2.5.1+dfsg-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) non-free arm64 revision bookworm-non-free-arm64:5f70e8e31d64f9241904e54a83dc639d92f4eea9ad1a57b26d40f3943f474929

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) non-free amd64 revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d, Debian 12 (Bookworm) non-free arm64 revision bookworm-non-free-arm64:5f70e8e31d64f9241904e54a83dc639d92f4eea9ad1a57b26d40f3943f474929. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) non-free amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: non-free/binary-amd64/Packages.xz
    Expected SHA-256: 8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d
    Observed SHA-256: 8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d
    Result: match verified

  • Debian 12 (Bookworm) non-free arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-non-free-arm64:5f70e8e31d64f9241904e54a83dc639d92f4eea9ad1a57b26d40f3943f474929

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: non-free/binary-arm64/Packages.xz
    Expected SHA-256: 5f70e8e31d64f9241904e54a83dc639d92f4eea9ad1a57b26d40f3943f474929
    Observed SHA-256: 5f70e8e31d64f9241904e54a83dc639d92f4eea9ad1a57b26d40f3943f474929
    Result: match verified

vienna-rna Package for Debian 12 (Bookworm) | OpenFactory