Debian 13 (Trixie) native package

cod-tools

tools for manipulating CIF format files

Packages / Debian 13 (Trixie) / science / cod-tools

Package: cod-tools (3.11.0+dfsg-1)

Maintainers:

Debian Science Maintainers

External Resources:

Homepage: [wiki.crystallography.net]

tools for manipulating CIF format files

Other Packages Related to cod-tools:

dep: [curl]
command line tool for transferring data with URL syntax
dep: [gawk]
GNU awk, a pattern scanning and processing language
dep: [libclone-perl]
module for recursively copying Perl datatypes
dep: [libcod-tools-perl]
tools for manipulating CIF format files - Perl modules
dep: [libdbd-mysql-perl]
Perl5 database interface to the MariaDB/MySQL database
dep: [libdbd-sqlite3-perl]
Perl DBI driver with a self-contained RDBMS
dep: [libdbi-perl]
Perl Database Interface (DBI)
dep: [libdigest-sha-perl]
Perl extension for SHA-1/224/256/384/512, SHA-512/224 and SHA-512/256
dep: [libgraph-easy-perl]
Perl module to convert or render graphs (as ASCII, HTML, SVG or via Graphviz)
dep: [libgraph-easy-as-svg-perl]
Perl module to output a Graph::Easy as Scalable Vector Graphics
dep: [libgraph-nauty-perl]
Perl bindings for nauty
dep: [libhtml-parser-perl]
collection of modules that parse HTML text documents
dep: [libjson-perl]
module for manipulating JSON-formatted data
dep: [liblist-moreutils-perl]
Perl module with additional list functions not found in List::Util
dep: [libwww-curl-perl]
Perl bindings to libcurl
dep: [libxml-simple-perl]
Perl module for reading and writing XML
dep: [openbabel]
Chemical toolbox utilities (cli)
dep: [perl]
Larry Wall's Practical Extraction and Report Language
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries

Download cod-tools

Architecture	Package Size	Installed Size	Files
arm64	369 KiB	2.1 MiB	[list of files]

Package file paths (203)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/cif2cod
/usr/bin/cif2csv
/usr/bin/cif2json
/usr/bin/cif2qg
/usr/bin/cif2rdf
/usr/bin/cif2ref
/usr/bin/cif2tsv
/usr/bin/cif2xyz
/usr/bin/cif_adjust_journal_name_volume
/usr/bin/cif_automorphism
/usr/bin/cif_bounding_box
/usr/bin/cif_cell_contents
/usr/bin/cif_classify
/usr/bin/cif_cod_check
/usr/bin/cif_cod_deposit
/usr/bin/cif_CODify
/usr/bin/cif_cod_numbers
/usr/bin/cif_compare_dics
/usr/bin/cif_correct_tags
/usr/bin/cif_create_AMCSD_pressure_temp_tags
/usr/bin/cif_ddl1_dic_check
/usr/bin/cif_ddlm_dic_check
/usr/bin/cif_ddlm_dic_print
/usr/bin/cif_dictionary_tags
/usr/bin/cif_diff
/usr/bin/cif_distances
/usr/bin/cif_estimate_Z
/usr/bin/cif_eval_numbers
/usr/bin/cif_Fcalc
/usr/bin/cif_fillcell
/usr/bin/cif_filter
/usr/bin/cif_find_duplicates
/usr/bin/cif_find_symmetry
/usr/bin/cif_fix_AMCSD_aniso_labels
/usr/bin/cif_fix_AMCSD_atom_labels
/usr/bin/cif_fix_values
/usr/bin/cif_guess_AMCSD_atom_types
/usr/bin/cif_hkl_check
/usr/bin/cif_hkl_COD_number
/usr/bin/cif_list_tags
/usr/bin/cif_mark_disorder
/usr/bin/cif_merge
/usr/bin/cif_molecule
/usr/bin/cif_mpod_v1_to_v2
/usr/bin/cif_mpod_v1_to_v3
/usr/bin/cif_mpod_v2_to_v1
/usr/bin/cif_mpod_v3_to_v1
/usr/bin/cif_overlay
/usr/bin/cif_p1
/usr/bin/cif_parse
/usr/bin/cifparse
/usr/bin/cif_polymer_multiplicity
/usr/bin/cif_reduce_cell
/usr/bin/cif_reduce_Niggli
/usr/bin/cif_reformat_AMCSD_author_names
/usr/bin/cif_reformat_pubmed_author_names
/usr/bin/cif_reformat_uppercase_author_names
/usr/bin/cif_select
/usr/bin/cif_set_value
/usr/bin/cif_sort_atoms
/usr/bin/cif_split
/usr/bin/cif_split_primitive
/usr/bin/cif_symop_apply
/usr/bin/cif_tags_in_list
/usr/bin/cif_tcod_tree
/usr/bin/cif-to-utf8
/usr/bin/cif_validate
/usr/bin/cif_values
/usr/bin/cifvalues
/usr/bin/cod2rdf
/usr/bin/codcif2sdf
/usr/bin/cod_fetch
/usr/bin/cod_manage_related
/usr/bin/cod-tools-version
/usr/bin/codxyz2fract
/usr/bin/codxyz2ortho
/usr/bin/cosets
/usr/bin/ddl1-to-ddlm
/usr/bin/ddlm_validate
/usr/bin/dic2markdown
/usr/bin/fetch_cif_dict
/usr/bin/find_numbers
/usr/bin/formula_sum
/usr/bin/json2cif
/usr/bin/molcif2sdf
/usr/bin/msg_parse
/usr/bin/oqmd2cif
/usr/bin/sdf_add_cod_data
/usr/bin/spacegroup_properties
/usr/bin/ssg3d
/usr/bin/ssg_symop_canonical
/usr/bin/ssg_symop_check
/usr/bin/ssg_symop_matrices
/usr/bin/ssg_symop_string
/usr/bin/syminv
/usr/bin/symmul
/usr/bin/symop_build_spacegroup
/usr/bin/symops
/usr/bin/utf8-to-cif
/usr/share/doc/cod-tools/changelog.Debian.gz
/usr/share/doc/cod-tools/changelog.gz
/usr/share/doc/cod-tools/copyright
/usr/share/doc/cod-tools/README
/usr/share/doc/cod-tools/README-COPYING
/usr/share/man/man1/cif2cod.1.gz
/usr/share/man/man1/cif2csv.1.gz
/usr/share/man/man1/cif2json.1.gz
/usr/share/man/man1/cif2qg.1.gz
/usr/share/man/man1/cif2rdf.1.gz
/usr/share/man/man1/cif2ref.1.gz
/usr/share/man/man1/cif2tsv.1.gz
/usr/share/man/man1/cif2xyz.1.gz
/usr/share/man/man1/cif_adjust_journal_name_volume.1.gz
/usr/share/man/man1/cif_automorphism.1.gz
/usr/share/man/man1/cif_bounding_box.1.gz
/usr/share/man/man1/cif_cell_contents.1.gz
/usr/share/man/man1/cif_classify.1.gz
/usr/share/man/man1/cif_cod_check.1.gz
/usr/share/man/man1/cif_cod_deposit.1.gz
/usr/share/man/man1/cif_CODify.1.gz
/usr/share/man/man1/cif_cod_numbers.1.gz
/usr/share/man/man1/cif_compare_dics.1.gz
/usr/share/man/man1/cif_correct_tags.1.gz
/usr/share/man/man1/cif_create_AMCSD_pressure_temp_tags.1.gz
/usr/share/man/man1/cif_ddl1_dic_check.1.gz
/usr/share/man/man1/cif_ddlm_dic_check.1.gz
/usr/share/man/man1/cif_ddlm_dic_print.1.gz
/usr/share/man/man1/cif_dictionary_tags.1.gz
/usr/share/man/man1/cif_diff.1.gz
/usr/share/man/man1/cif_distances.1.gz
/usr/share/man/man1/cif_estimate_Z.1.gz
/usr/share/man/man1/cif_eval_numbers.1.gz
/usr/share/man/man1/cif_Fcalc.1.gz
/usr/share/man/man1/cif_fillcell.1.gz
/usr/share/man/man1/cif_filter.1.gz
/usr/share/man/man1/cif_find_duplicates.1.gz
/usr/share/man/man1/cif_find_symmetry.1.gz
/usr/share/man/man1/cif_fix_AMCSD_aniso_labels.1.gz
/usr/share/man/man1/cif_fix_AMCSD_atom_labels.1.gz
/usr/share/man/man1/cif_fix_values.1.gz
/usr/share/man/man1/cif_guess_AMCSD_atom_types.1.gz
/usr/share/man/man1/cif_hkl_check.1.gz
/usr/share/man/man1/cif_hkl_COD_number.1.gz
/usr/share/man/man1/cif_list_tags.1.gz
/usr/share/man/man1/cif_mark_disorder.1.gz
/usr/share/man/man1/cif_merge.1.gz
/usr/share/man/man1/cif_molecule.1.gz
/usr/share/man/man1/cif_mpod_v1_to_v2.1.gz
/usr/share/man/man1/cif_mpod_v1_to_v3.1.gz
/usr/share/man/man1/cif_mpod_v2_to_v1.1.gz
/usr/share/man/man1/cif_mpod_v3_to_v1.1.gz
/usr/share/man/man1/cif_overlay.1.gz
/usr/share/man/man1/cif_p1.1.gz
/usr/share/man/man1/cif_parse.1.gz
/usr/share/man/man1/cifparse.1.gz
/usr/share/man/man1/cif_polymer_multiplicity.1.gz
/usr/share/man/man1/cif_reduce_cell.1.gz
/usr/share/man/man1/cif_reduce_Niggli.1.gz
/usr/share/man/man1/cif_reformat_AMCSD_author_names.1.gz
/usr/share/man/man1/cif_reformat_pubmed_author_names.1.gz
/usr/share/man/man1/cif_reformat_uppercase_author_names.1.gz
/usr/share/man/man1/cif_select.1.gz
/usr/share/man/man1/cif_set_value.1.gz
/usr/share/man/man1/cif_sort_atoms.1.gz
/usr/share/man/man1/cif_split.1.gz
/usr/share/man/man1/cif_split_primitive.1.gz
/usr/share/man/man1/cif_symop_apply.1.gz
/usr/share/man/man1/cif_tags_in_list.1.gz
/usr/share/man/man1/cif_tcod_tree.1.gz
/usr/share/man/man1/cif-to-utf8.1.gz
/usr/share/man/man1/cif_validate.1.gz
/usr/share/man/man1/cif_values.1.gz
/usr/share/man/man1/cifvalues.1.gz
/usr/share/man/man1/cod2rdf.1.gz
/usr/share/man/man1/codcif2sdf.1.gz
/usr/share/man/man1/cod_fetch.1.gz
/usr/share/man/man1/cod_manage_related.1.gz
/usr/share/man/man1/cod-tools-version.1.gz
/usr/share/man/man1/codxyz2fract.1.gz
/usr/share/man/man1/codxyz2ortho.1.gz
/usr/share/man/man1/cosets.1.gz
/usr/share/man/man1/ddl1-to-ddlm.1.gz
/usr/share/man/man1/ddlm_validate.1.gz
/usr/share/man/man1/dic2markdown.1.gz
/usr/share/man/man1/fetch_cif_dict.1.gz
/usr/share/man/man1/find_numbers.1.gz
/usr/share/man/man1/formula_sum.1.gz
/usr/share/man/man1/json2cif.1.gz
/usr/share/man/man1/molcif2sdf.1.gz
/usr/share/man/man1/msg_parse.1.gz
/usr/share/man/man1/oqmd2cif.1.gz
/usr/share/man/man1/sdf_add_cod_data.1.gz
/usr/share/man/man1/spacegroup_properties.1.gz
/usr/share/man/man1/ssg3d.1.gz
/usr/share/man/man1/ssg_symop_canonical.1.gz
/usr/share/man/man1/ssg_symop_check.1.gz
/usr/share/man/man1/ssg_symop_matrices.1.gz
/usr/share/man/man1/ssg_symop_string.1.gz
/usr/share/man/man1/syminv.1.gz
/usr/share/man/man1/symmul.1.gz
/usr/share/man/man1/symop_build_spacegroup.1.gz
/usr/share/man/man1/symops.1.gz
/usr/share/man/man1/utf8-to-cif.1.gz

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 13 (Trixie) in the browser Build an image that includes cod-tools

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
3.11.0+dfsg-1	trixie / main	arm64	Debian 13 · main · arm64	369 KiB	2.1 MiB	pool/main/c/cod-tools/cod-tools_3.11.0+dfsg-1_arm64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3.11.0+dfsg-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 6a41950bd6865f0efd75718dd3a2becf0d2a4cd178e0414ede58926b4ce1195a

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '6a41950bd6865f0efd75718dd3a2becf0d2a4cd178e0414ede58926b4ce1195a' 'cod-tools_3.11.0+dfsg-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified