Debian 13 (Trixie) native package

pftools

build and search protein and DNA generalized profiles

Packages / Debian 13 (Trixie) / science / pftools

Package: pftools (3.2.12-1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

build and search protein and DNA generalized profiles

Other Packages Related to pftools:

dep: [libc6] (>= 2.33)
GNU C Library: Shared libraries
dep: [libgfortran5] (>= 8)
Runtime library for GNU Fortran applications
dep: [libpcre2-8-0] (>= 10.22)
New Perl Compatible Regular Expression Library- 8 bit runtime files
dep: [libfile-slurp-perl]
single call read & write file routines

Download pftools

Architecture	Package Size	Installed Size	Files
amd64	24 MiB	51 MiB	[list of files]

Paketdateipfade (135)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/2ft
/usr/bin/6ft
/usr/bin/compare_2_profiles.pl
/usr/bin/fasta_to_fastq.pl
/usr/bin/make_iupac_cmp.pl
/usr/bin/pfcalibrateV3
/usr/bin/pfdump
/usr/bin/pfemit
/usr/bin/pfgtop
/usr/bin/pfhtop
/usr/bin/pfindex
/usr/bin/pfmake
/usr/bin/pfpam
/usr/bin/pfscale
/usr/bin/pfscan
/usr/bin/pfscanV3
/usr/bin/pfsearch
/usr/bin/pfsearchV3
/usr/bin/pfw
/usr/bin/psa2msa
/usr/bin/ps_scan.pl
/usr/bin/ptof
/usr/bin/ptoh
/usr/bin/scramble_fasta.pl
/usr/bin/sort_fasta.pl
/usr/bin/split_profile_file.pl
/usr/share/doc/pftools/btt129.pdf.gz
/usr/share/doc/pftools/changelog.Debian.gz
/usr/share/doc/pftools/changelog.gz
/usr/share/doc/pftools/copyright
/usr/share/doc/pftools/examples/16S.prf
/usr/share/doc/pftools/examples/all.prf
/usr/share/doc/pftools/examples/all.seq
/usr/share/doc/pftools/examples/Calibration/reversed.seq
/usr/share/doc/pftools/examples/Calibration/window20.seq
/usr/share/doc/pftools/examples/CMakeLists.txt
/usr/share/doc/pftools/examples/coils.prf
/usr/share/doc/pftools/examples/CVPBR322.embl
/usr/share/doc/pftools/examples/ecp.prf
/usr/share/doc/pftools/examples/FamilyProfile/DoubleProfile.prf
/usr/share/doc/pftools/examples/FamilyProfile/sequence.seq
/usr/share/doc/pftools/examples/FamilyProfile/sh2.prf
/usr/share/doc/pftools/examples/GTPA_HUMAN.dat
/usr/share/doc/pftools/examples/hiv.fastq
/usr/share/doc/pftools/examples/hiv.prf
/usr/share/doc/pftools/examples/htop_issue.hmm
/usr/share/doc/pftools/examples/Matrices/blosum100.cmp
/usr/share/doc/pftools/examples/Matrices/blosum30.cmp
/usr/share/doc/pftools/examples/Matrices/blosum45.cmp
/usr/share/doc/pftools/examples/Matrices/blosum50.cmp
/usr/share/doc/pftools/examples/Matrices/blosum62.cmp
/usr/share/doc/pftools/examples/Matrices/blosum65.cmp
/usr/share/doc/pftools/examples/Matrices/blosum80.cmp
/usr/share/doc/pftools/examples/Matrices/dna_50_40.cmp
/usr/share/doc/pftools/examples/Matrices/gonnet.cmp
/usr/share/doc/pftools/examples/Matrices/iupac_50_40.cmp
/usr/share/doc/pftools/examples/Matrices/pam120.cmp
/usr/share/doc/pftools/examples/Matrices/pam160.cmp
/usr/share/doc/pftools/examples/Matrices/pam200.cmp
/usr/share/doc/pftools/examples/Matrices/pam220.cmp
/usr/share/doc/pftools/examples/Matrices/pam250.cmp
/usr/share/doc/pftools/examples/Matrices/pam30.cmp
/usr/share/doc/pftools/examples/Matrices/pam400.cmp
/usr/share/doc/pftools/examples/Matrices/pam40.cmp
/usr/share/doc/pftools/examples/Matrices/pam80.cmp
/usr/share/doc/pftools/examples/MYSA_HUMAN
/usr/share/doc/pftools/examples/patterns/ambiguities_excluded.hit
/usr/share/doc/pftools/examples/patterns/ambiguities.hit
/usr/share/doc/pftools/examples/patterns/anchorC.hit
/usr/share/doc/pftools/examples/patterns/anchorN.hit
/usr/share/doc/pftools/examples/patterns/fully_defined.hit
/usr/share/doc/pftools/examples/patterns/multiple_matches.hit
/usr/share/doc/pftools/examples/patterns/repetition.hit
/usr/share/doc/pftools/examples/patterns/repetition_range.hit
/usr/share/doc/pftools/examples/patterns/undefined.hit
/usr/share/doc/pftools/examples/pfam_sh3.hmm
/usr/share/doc/pftools/examples/prosite13.prf
/usr/share/doc/pftools/examples/PS00741_PS50010.dat
/usr/share/doc/pftools/examples/R76849.seq
/usr/share/doc/pftools/examples/rand_dna.prf
/usr/share/doc/pftools/examples/rand_dna.seq
/usr/share/doc/pftools/examples/reverse/forward_dna.seq
/usr/share/doc/pftools/examples/reverse/forward_dna_shift5.seq
/usr/share/doc/pftools/examples/reverse/forward.msa
/usr/share/doc/pftools/examples/reverse/forward.prf
/usr/share/doc/pftools/examples/reverse/forward.seq
/usr/share/doc/pftools/examples/reverse/reverse.msa
/usr/share/doc/pftools/examples/reverse/reverse.prf
/usr/share/doc/pftools/examples/reverse/reverse.seq
/usr/share/doc/pftools/examples/RF00177.msa
/usr/share/doc/pftools/examples/sample.fastq
/usr/share/doc/pftools/examples/score.lis
/usr/share/doc/pftools/examples/sh2.prf
/usr/share/doc/pftools/examples/sh3.gpr
/usr/share/doc/pftools/examples/sh3.msf
/usr/share/doc/pftools/examples/sh3.prf
/usr/share/doc/pftools/examples/sh3.seq
/usr/share/doc/pftools/examples/SRR9619541.sample.fastq
/usr/share/doc/pftools/examples/standard.random
/usr/share/doc/pftools/examples/test_pfsearchV3_iupac.pl
/usr/share/doc/pftools/examples/test_pfsearchV3_pattern-regexp.sh.cmake
/usr/share/doc/pftools/examples/test_scan_search.pl
/usr/share/doc/pftools/examples/test_V2.sh
/usr/share/doc/pftools/examples/test_V3.out
/usr/share/doc/pftools/examples/test_V3_output.sh.cmake
/usr/share/doc/pftools/examples/test_V3.sh
/usr/share/doc/pftools/examples/Toolbox.pm
/usr/share/doc/pftools/examples/VAV_HUMAN.seq
/usr/share/doc/pftools/examples/VAV_RAT.seq
/usr/share/doc/pftools/posterPfsearchV3SIBdays2013_v0.3.pdf.gz
/usr/share/doc/pftools/profile.pdf.gz
/usr/share/doc/pftools/profile.txt.gz
/usr/share/doc/pftools/README.Debian
/usr/share/doc/pftools/README.md.gz
/usr/share/doc/pftools/README.pftools.v2.3.md.gz
/usr/share/doc/pftools/README.test
/usr/share/doc/pftools/run-unit-test
/usr/share/lintian/overrides/pftools
/usr/share/man/man1/2ft.1.gz
/usr/share/man/man1/6ft.1.gz
/usr/share/man/man1/pfdump.1.gz
/usr/share/man/man1/pfgtop.1.gz
/usr/share/man/man1/pfhtop.1.gz
/usr/share/man/man1/pfmake.1.gz
/usr/share/man/man1/pfscale.1.gz
/usr/share/man/man1/pfscan.1.gz
/usr/share/man/man1/pfsearch.1.gz
/usr/share/man/man1/pfsearchV2.1.gz
/usr/share/man/man1/pfsearchV3.1.gz
/usr/share/man/man1/pfw.1.gz
/usr/share/man/man1/psa2msa.1.gz
/usr/share/man/man1/ptof.1.gz
/usr/share/man/man1/ptoh.1.gz
/usr/share/man/man5/psa.5.gz
/usr/share/man/man5/xpsa.5.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Dieses Paket verwenden

OpenFactory kann dieses Betriebssystem in einer Browser-VM starten oder einen Image-Build mit dem nativen Paketnamen aus diesem Datensatz beginnen.

Debian 13 (Trixie) im Browser testen Image mit pftools bauen

Versionen, Suiten und Repositories

Jede Zeile ist Paketindex-Metadaten für eine Version, Architektur, Suite und ein Repository. Namen, URLs und Größen stammen aus der Quelle; ein Link ist ein veränderbarer Abrufort, kein Weitergabanspruch von OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
3.2.12-1	trixie / main	amd64	Debian 13 · main · amd64	24 MiB	51 MiB	pool/main/p/pftools/pftools_3.2.12-1_amd64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Prüfsummen und Beobachtungsdaten

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3.2.12-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 55b4bb153a63706f16e3150bfba2e85e8deac5f90bada8da879df7cd80ffd63c

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '55b4bb153a63706f16e3150bfba2e85e8deac5f90bada8da879df7cd80ffd63c' 'pftools_3.2.12-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Vollständigkeit des Katalogsatzes

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Quellen und Herkunft

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified