Package: plasmidid (1.6.5+dfsg-2) mapping-based, assembly-assisted plasmid identification tool Other Packages Related to plasmidid: [python3 ] [any]
interactive high-level object-oriented language (default python3 version)
[ncbi-blast+ ]
next generation suite of BLAST sequence search tools
[bedtools ]
suite of utilities for comparing genomic features
[bowtie2 ]
ultrafast memory-efficient short read aligner
[samtools ]
processing sequence alignments in SAM, BAM and CRAM formats
[prokka ]
rapid annotation of prokaryotic genomes
[cd-hit ]
suite of programs designed to quickly group sequences
[mash ]
fast genome and metagenome distance estimation using MinHash
[circos ]
plotter for visualizing data
[trimmomatic ]
flexible read trimming tool for Illumina NGS data
[spades ]
genome assembler for single-cell and isolates data sets
[python3-biopython ]
Python3 library for bioinformatics
[python3-numpy ]
Python library for numerical computations (Python 3)
[python3-pandas ]
data structures for "relational" or "labeled" data
Package file paths (42) Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.
/etc/plasmidid/annotation_config_file.txt /etc/plasmidid/circos_individual_1_3_0.conf /etc/plasmidid/circos_individual_1_3_3.conf /etc/plasmidid/circos_summary_1_3_0.conf /etc/plasmidid/circos_summary_1_3_3.conf /etc/plasmidid/OR.conf /etc/plasmidid/simple.conf /usr/bin/plasmidID /usr/share/doc/plasmidid/changelog.Debian.gz /usr/share/doc/plasmidid/changelog.gz /usr/share/doc/plasmidid/copyright /usr/share/man/man1/plasmidID.1.gz /usr/share/plasmidid/bin/adapt_filter_coverage.sh /usr/share/plasmidid/bin/blast_align.sh /usr/share/plasmidid/bin/blast_to_bed.sh /usr/share/plasmidid/bin/blast_to_complete.sh /usr/share/plasmidid/bin/blast_to_link.sh /usr/share/plasmidid/bin/bowtie_mapper.sh /usr/share/plasmidid/bin/build_karyotype.sh /usr/share/plasmidid/bin/calculate_seqlen.sh /usr/share/plasmidid/bin/cdhit_cluster.sh /usr/share/plasmidid/bin/check_dependencies.sh /usr/share/plasmidid/bin/check_mandatory_files.sh /usr/share/plasmidid/bin/coordinate_adapter.sh /usr/share/plasmidid/bin/download_plasmid_database.py /usr/share/plasmidid/bin/draw_circos_images.sh /usr/share/plasmidid/bin/filter_fasta.sh /usr/share/plasmidid/bin/get_coverage.sh /usr/share/plasmidid/bin/gff_to_bed.sh /usr/share/plasmidid/bin/mashclust.py /usr/share/plasmidid/bin/mash_screener.sh /usr/share/plasmidid/bin/ncbi_database_fetcher.sh /usr/share/plasmidid/bin/process_cluster_output.sh /usr/share/plasmidid/bin/prokka_annotation.sh /usr/share/plasmidid/bin/quality_trim.sh /usr/share/plasmidid/bin/rename_from_fasta.sh /usr/share/plasmidid/bin/sam_to_bam.sh /usr/share/plasmidid/bin/spades_assembly.sh /usr/share/plasmidid/bin/summary_report_pid.py /usr/share/plasmidid/bin/summary_table.sh /usr/share/plasmidid/plasmidID /usr/share/python3/runtime.d/plasmidid.rtupdate Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Use this package OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.
Versions, suites, and repositories Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.
Checksums and observation dates For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.
1.6.5+dfsg-2 / amd64 Observed Sep 1, 2026 to Sep 1, 2026
Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.
Source-reported sha256: e0ec3f8d2467bd4f685d0c2c32b08c57c3cf170714b522094b657a1f11f9336f
After downloading that exact artifact, compare its bytes with the source-reported expected digest:
printf '%s %s\n' 'e0ec3f8d2467bd4f685d0c2c32b08c57c3cf170714b522094b657a1f11f9336f' 'plasmidid_1.6.5+dfsg-2_amd64.deb' | sha256sum --check --strict -A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.
Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
1.6.5+dfsg-2 / arm64 Observed Sep 1, 2026 to Sep 1, 2026
Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.
Source-reported sha256: 691884337d6900379038e7543cb31694c0970fe58691dadca0bd858b01c7df94
After downloading that exact artifact, compare its bytes with the source-reported expected digest:
printf '%s %s\n' '691884337d6900379038e7543cb31694c0970fe58691dadca0bd858b01c7df94' 'plasmidid_1.6.5+dfsg-2_arm64.deb' | sha256sum --check --strict -A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.
Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Sources and provenance Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed-object SHA-256 98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint 4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision debian-archive-keyring.gpgSHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy gpgv (GnuPG) 2.4.9
Verification time Sep 1, 2026 Signed Release → package-index hash linkage Path: main/binary-amd64/Packages.xz3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b33ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed-object SHA-256 98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint 4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision debian-archive-keyring.gpgSHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy gpgv (GnuPG) 2.4.9
Verification time Sep 1, 2026 Signed Release → package-index hash linkage Path: main/binary-arm64/Packages.xz753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
