Package: python3-seqcluster (1.2.9+ds-5) analysis of small RNA in NGS data Other Packages Related to python3-seqcluster: dep: [python3 ] [any]
interactive high-level object-oriented language (default python3 version)
dep: [python3-pysam ]
interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: [python3-pybedtools ]
Python 3 wrapper around BEDTools for bioinformatics work
dep: [python3-scipy ]
scientific tools for Python 3
dep: [python3-numpy ]
Python library for numerical computations (Python 3)
dep: [python3-progressbar ]
text progress bar library for Python (Python 3)
dep: [python3-pandas ]
data structures for "relational" or "labeled" data
dep: [python3-colorlog ]
formatter to use with the logging module of Python 3
dep: [python3-mirtop ]
annotate miRNAs with a standard mirna/isomir naming (Python 3)
dep: [python3-myst-parser ]
rich and extensible flavor of Markdown for technical docs
dep: [python3-yaml ]
YAML parser and emitter for Python3
rec: [rna-star ]
ultrafast universal RNA-seq aligner
rec: [bowtie2 ]
ultrafast memory-efficient short read aligner
rec: [bowtie ]
Ultrafast memory-efficient short read aligner
rec: [fastqc ]
quality control for high throughput sequence data
rec: [samtools ]
processing sequence alignments in SAM, BAM and CRAM formats
rec: [bedtools ]
suite of utilities for comparing genomic features
rec: [mirtop ]
annotate miRNAs with a standard mirna/isomir naming
rec: [python3-cutadapt ]
Clean biological sequences from high-throughput sequencing reads (Python 3)
rec: [libjs-bootstrap ]
HTML, CSS and JS framework
rec: [libjs-jquery ]
JavaScript library for dynamic web applications
rec: [libjs-jquery-datatables ]
jQuery plug-in that makes nice tables from different data sources
rec: [libjs-jquery-tablesorter ]
jQuery flexible client-side table sorting plugin
rec: [libjs-jquery-ui ]
JavaScript UI library for dynamic web applications
rec: [python3-tz ]
transitional package to rename python3-tz
rec: [r-bioc-deseq2 ]
R package for RNA-Seq Differential Expression Analysis
rec: [r-cran-devtools ]
Tools to Make Developing R Packages Easier
rec: [r-cran-dplyr ]
GNU R grammar of data manipulation
rec: [r-cran-ggplot2 ]
implementation of the Grammar of Graphics
rec: [r-cran-gplots ]
GNU R package with tools for plotting data by Greg Warnes et al
rec: [r-cran-gridextra ]
GNU R package with extensions for the grid package
rec: [r-cran-gtools ]
GNU R package with R programming tools by Greg Warnes et al
rec: [r-cran-knitr ]
GNU R package for dynamic report generation using Literate Programming
rec: [r-cran-pheatmap ]
GNU R package to create pretty heatmaps
rec: [r-cran-reshape ]
Flexibly reshape data
rec: [vienna-rna ]
RNA sequence analysis
rec: [r-bioc-edger ]
Empirical analysis of digital gene expression data in R
rec: [r-bioc-htsfilter ]
GNU R filter replicated high-throughput transcriptome sequencing data
rec: r-bioc-degreport
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Versions, suites, and repositories Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.
Checksums and observation dates For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.
1.2.9+ds-5 / all Observed Sep 1, 2026 to Sep 1, 2026
Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.
Source-reported sha256: c26f7c346323e36a5b34a818ce3d7ef4e1c91a2d349e778136f5b3b0d03248ea
After downloading that exact artifact, compare its bytes with the source-reported expected digest:
printf '%s %s\n' 'c26f7c346323e36a5b34a818ce3d7ef4e1c91a2d349e778136f5b3b0d03248ea' 'python3-seqcluster_1.2.9+ds-5_all.deb' | sha256sum --check --strict -A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.
Field source: Debian 13 (Trixie) contrib amd64 revision trixie-contrib-amd64:9979608b93622d99f0b8bd1143c8ba7039a5d23bd3fcebb8331a1b4b531c96d2
1.2.9+ds-5 / all Observed Sep 1, 2026 to Sep 1, 2026
Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.
Source-reported sha256: c26f7c346323e36a5b34a818ce3d7ef4e1c91a2d349e778136f5b3b0d03248ea
After downloading that exact artifact, compare its bytes with the source-reported expected digest:
printf '%s %s\n' 'c26f7c346323e36a5b34a818ce3d7ef4e1c91a2d349e778136f5b3b0d03248ea' 'python3-seqcluster_1.2.9+ds-5_all.deb' | sha256sum --check --strict -A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.
Field source: Debian 13 (Trixie) contrib arm64 revision trixie-contrib-arm64:4a626305e0a35511d96428c6f8b6c6378312c010ebe58d66f15b3e127a61eed6
Sources and provenance Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.
Authoritative source; repository metadata signature verified, revision trixie-contrib-amd64:9979608b93622d99f0b8bd1143c8ba7039a5d23bd3fcebb8331a1b4b531c96d2
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed-object SHA-256 98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint 4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision debian-archive-keyring.gpgSHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy gpgv (GnuPG) 2.4.9 openfactory-software-catalog-signature-v1
Verification time Sep 1, 2026 Signed Release → package-index hash linkage Path: contrib/binary-amd64/Packages.xz Expected SHA-256: 9979608b93622d99f0b8bd1143c8ba7039a5d23bd3fcebb8331a1b4b531c96d2 Observed SHA-256: 9979608b93622d99f0b8bd1143c8ba7039a5d23bd3fcebb8331a1b4b531c96d2 Result: match verified
Authoritative source; repository metadata signature verified, revision trixie-contrib-arm64:4a626305e0a35511d96428c6f8b6c6378312c010ebe58d66f15b3e127a61eed6
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed-object SHA-256 98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint 4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision debian-archive-keyring.gpgSHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy gpgv (GnuPG) 2.4.9 openfactory-software-catalog-signature-v1
Verification time Sep 1, 2026 Signed Release → package-index hash linkage Path: contrib/binary-arm64/Packages.xz Expected SHA-256: 4a626305e0a35511d96428c6f8b6c6378312c010ebe58d66f15b3e127a61eed6 Observed SHA-256: 4a626305e0a35511d96428c6f8b6c6378312c010ebe58d66f15b3e127a61eed6 Result: match verified