Package: python3-seqcluster (1.2.9+ds-3)

dep: [python3] [any]

interactive high-level object-oriented language (default python3 version)

dep: [python3-pysam]

interface for the SAM/BAM sequence alignment and mapping format (Python 3)

dep: [python3-pybedtools]

Python 3 wrapper around BEDTools for bioinformatics work

dep: [python3-scipy]

scientific tools for Python 3

dep: [python3-numpy]

Fast array facility to the Python 3 language

dep: [python3-nose2]

Next generation of nicer testing for Python3

dep: [python3-progressbar]

text progress bar library for Python (Python 3)

dep: [python3-pandas]

data structures for "relational" or "labeled" data

dep: [python3-colorlog]

formatter to use with the logging module of Python 3

dep: [python3-mirtop]

annotate miRNAs with a standard mirna/isomir naming (Python 3)

dep: [python3-myst-parser]

rich and extensible flavor of Markdown for technical docs

dep: [python3-yaml]

YAML parser and emitter for Python3

rec: [rna-star]

ultrafast universal RNA-seq aligner

rec: [bowtie2]

ultrafast memory-efficient short read aligner

rec: [bowtie]

Ultrafast memory-efficient short read aligner

rec: [fastqc]

quality control for high throughput sequence data

rec: [samtools]

processing sequence alignments in SAM, BAM and CRAM formats

rec: [bedtools]

suite of utilities for comparing genomic features

rec: [mirtop]

annotate miRNAs with a standard mirna/isomir naming

rec: [python3-cutadapt]

Clean biological sequences from high-throughput sequencing reads (Python 3)

rec: [libjs-bootstrap]

HTML, CSS and JS framework

rec: [libjs-jquery]

JavaScript library for dynamic web applications

rec: [libjs-jquery-datatables]

jQuery plug-in that makes nice tables from different data sources

rec: [libjs-jquery-tablesorter]

jQuery flexible client-side table sorting plugin

rec: [libjs-jquery-ui]

JavaScript UI library for dynamic web applications

rec: python3-dateutils

Package not available

rec: [python3-tz]

Python3 version of the Olson timezone database

rec: [r-bioc-deseq2]

R package for RNA-Seq Differential Expression Analysis

rec: [r-cran-devtools]

Tools to Make Developing R Packages Easier

rec: [r-cran-dplyr]

GNU R grammar of data manipulation

rec: [r-cran-ggplot2]

implementation of the Grammar of Graphics

rec: [r-cran-gplots]

GNU R package with tools for plotting data by Greg Warnes et al

rec: [r-cran-gridextra]

GNU R package with extensions for the grid package

rec: [r-cran-gtools]

GNU R package with R programming tools by Greg Warnes et al

rec: [r-cran-knitr]

GNU R package for dynamic report generation using Literate Programming

rec: [r-cran-pheatmap]

GNU R package to create pretty heatmaps

rec: [r-cran-reshape]

Flexibly reshape data

rec: [vienna-rna]

RNA sequence analysis

rec: [r-bioc-edger]

Empirical analysis of digital gene expression data in R

rec: [r-bioc-htsfilter]

GNU R filter replicated high-throughput transcriptome sequencing data

rec: [r-bioc-degreport]

BioConductor report of DEG analysis

sug: [seqcluster]

analysis of small RNA in NGS data