Debian 13 (Trixie) native package

r-bioc-dada2

sample inference from amplicon sequencing data

Packages / Debian 13 (Trixie) / gnu-r / r-bioc-dada2

Package: r-bioc-dada2 (1.34.0+dfsg-2)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

sample inference from amplicon sequencing data

Other Packages Related to r-bioc-dada2:

dep: r-api-4.0
Package not available
dep: r-api-bioc-3.20
Package not available
dep: [r-cran-rcpp] (>= 0.12.0)
GNU R package for Seamless R and C++ Integration
dep: [r-bioc-biostrings] (>= 2.42.1)
GNU R string objects representing biological sequences
dep: [r-cran-ggplot2] (>= 2.1.0)
implementation of the Grammar of Graphics
dep: [r-cran-reshape2] (>= 1.4.1)
Flexibly reshape data: a reboot of the reshape package
dep: [r-bioc-shortread] (>= 1.32.0)
GNU R classes and methods for high-throughput short-read sequencing data
dep: [r-cran-rcppparallel] (>= 4.3.0)
parallel programming tools for Rcpp
dep: [r-bioc-iranges] (>= 2.6.0)
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-xvector] (>= 0.16.0)
BioConductor representation and manpulation of external sequences
dep: [r-bioc-biocgenerics] (>= 0.22.0)
generic functions for Bioconductor
dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [libtbb12] (>= 2022.0.0)
parallelism library for C++ - runtime files

sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats

Download r-bioc-dada2

Architecture	Package Size	Installed Size	Files
amd64	2.7 MiB	3.1 MiB	[list of files]

Package file paths (46)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/dada2/CITATION
/usr/lib/R/site-library/dada2/data/Rdata.rdb
/usr/lib/R/site-library/dada2/data/Rdata.rds
/usr/lib/R/site-library/dada2/data/Rdata.rdx
/usr/lib/R/site-library/dada2/DESCRIPTION
/usr/lib/R/site-library/dada2/doc/dada2-intro.R
/usr/lib/R/site-library/dada2/doc/dada2-intro.Rmd
/usr/lib/R/site-library/dada2/doc/index.html
/usr/lib/R/site-library/dada2/extdata/example_seqs.fa
/usr/lib/R/site-library/dada2/extdata/example_species_assignment.fa.gz
/usr/lib/R/site-library/dada2/extdata/example_train_set.fa.gz
/usr/lib/R/site-library/dada2/extdata/phix_genome.fa
/usr/lib/R/site-library/dada2/extdata/sam1F.fastq.gz
/usr/lib/R/site-library/dada2/extdata/sam1R.fastq.gz
/usr/lib/R/site-library/dada2/extdata/sam2F.fastq.gz
/usr/lib/R/site-library/dada2/extdata/sam2R.fastq.gz
/usr/lib/R/site-library/dada2/extdata/samPB.fastq.gz
/usr/lib/R/site-library/dada2/extdata/samPBprimers.fastq.gz
/usr/lib/R/site-library/dada2/extdata/ten_16s.100.fa.gz
/usr/lib/R/site-library/dada2/help/aliases.rds
/usr/lib/R/site-library/dada2/help/AnIndex
/usr/lib/R/site-library/dada2/help/dada2.rdb
/usr/lib/R/site-library/dada2/help/dada2.rdx
/usr/lib/R/site-library/dada2/help/paths.rds
/usr/lib/R/site-library/dada2/html/00Index.html
/usr/lib/R/site-library/dada2/html/R.css
/usr/lib/R/site-library/dada2/include/dada2.h
/usr/lib/R/site-library/dada2/include/dada2_RcppExports.h
/usr/lib/R/site-library/dada2/INDEX
/usr/lib/R/site-library/dada2/libs/dada2.so
/usr/lib/R/site-library/dada2/Meta/data.rds
/usr/lib/R/site-library/dada2/Meta/features.rds
/usr/lib/R/site-library/dada2/Meta/hsearch.rds
/usr/lib/R/site-library/dada2/Meta/links.rds
/usr/lib/R/site-library/dada2/Meta/nsInfo.rds
/usr/lib/R/site-library/dada2/Meta/package.rds
/usr/lib/R/site-library/dada2/Meta/Rd.rds
/usr/lib/R/site-library/dada2/Meta/vignette.rds
/usr/lib/R/site-library/dada2/NAMESPACE
/usr/lib/R/site-library/dada2/NEWS
/usr/lib/R/site-library/dada2/R/dada2
/usr/lib/R/site-library/dada2/R/dada2.rdb
/usr/lib/R/site-library/dada2/R/dada2.rdx
/usr/share/doc/r-bioc-dada2/changelog.Debian.gz
/usr/share/doc/r-bioc-dada2/copyright
/usr/share/lintian/overrides/r-bioc-dada2

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 13 (Trixie) in the browser Build an image that includes r-bioc-dada2

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.34.0+dfsg-2	trixie / main	amd64	Debian 13 · main · amd64	2.7 MiB	3.1 MiB	pool/main/r/r-bioc-dada2/r-bioc-dada2_1.34.0+dfsg-2_amd64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.34.0+dfsg-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: b776682dd85bffcaf60c48944ab16f2e5624fdc919763c700357cfaa606a9742

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'b776682dd85bffcaf60c48944ab16f2e5624fdc919763c700357cfaa606a9742' 'r-bioc-dada2_1.34.0+dfsg-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified