Debian 13 (Trixie) native package

r-bioc-pwalign

Perform pairwise sequence alignments

Packages / Debian 13 (Trixie) / gnu-r / r-bioc-pwalign

Package: r-bioc-pwalign (1.2.0-3)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

Perform pairwise sequence alignments

Other Packages Related to r-bioc-pwalign:

dep: r-api-4.0
Package not available
dep: r-api-bioc-3.20
Package not available
dep: [r-bioc-biocgenerics]
generic functions for Bioconductor
dep: [r-bioc-s4vectors]
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-iranges]
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-biostrings] (>= 2.71.5)
GNU R string objects representing biological sequences
dep: [r-bioc-xvector]
BioConductor representation and manpulation of external sequences
dep: [libc6] (>= 2.14)
GNU C Library: Shared libraries

sug: [r-cran-runit]
GNU R package providing unit testing framework

Download r-bioc-pwalign

Architecture	Package Size	Installed Size	Files
amd64	746 KiB	1.1 MiB	[list of files]
arm64	745 KiB	1.1 MiB	[list of files]

Package file paths (42)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/pwalign/data/BLOSUM100.rda
/usr/lib/R/site-library/pwalign/data/BLOSUM45.rda
/usr/lib/R/site-library/pwalign/data/BLOSUM50.rda
/usr/lib/R/site-library/pwalign/data/BLOSUM62.rda
/usr/lib/R/site-library/pwalign/data/BLOSUM80.rda
/usr/lib/R/site-library/pwalign/data/PAM120.rda
/usr/lib/R/site-library/pwalign/data/PAM250.rda
/usr/lib/R/site-library/pwalign/data/PAM30.rda
/usr/lib/R/site-library/pwalign/data/PAM40.rda
/usr/lib/R/site-library/pwalign/data/PAM70.rda
/usr/lib/R/site-library/pwalign/data/phiX174Phage.rda
/usr/lib/R/site-library/pwalign/data/srPhiX174.rda
/usr/lib/R/site-library/pwalign/DESCRIPTION
/usr/lib/R/site-library/pwalign/doc/index.html
/usr/lib/R/site-library/pwalign/doc/PairwiseAlignments.pdf
/usr/lib/R/site-library/pwalign/doc/PairwiseAlignments.R
/usr/lib/R/site-library/pwalign/doc/PairwiseAlignments.Rnw
/usr/lib/R/site-library/pwalign/help/aliases.rds
/usr/lib/R/site-library/pwalign/help/AnIndex
/usr/lib/R/site-library/pwalign/help/paths.rds
/usr/lib/R/site-library/pwalign/help/pwalign.rdb
/usr/lib/R/site-library/pwalign/help/pwalign.rdx
/usr/lib/R/site-library/pwalign/html/00Index.html
/usr/lib/R/site-library/pwalign/html/R.css
/usr/lib/R/site-library/pwalign/INDEX
/usr/lib/R/site-library/pwalign/libs/pwalign.so
/usr/lib/R/site-library/pwalign/Meta/data.rds
/usr/lib/R/site-library/pwalign/Meta/features.rds
/usr/lib/R/site-library/pwalign/Meta/hsearch.rds
/usr/lib/R/site-library/pwalign/Meta/links.rds
/usr/lib/R/site-library/pwalign/Meta/nsInfo.rds
/usr/lib/R/site-library/pwalign/Meta/package.rds
/usr/lib/R/site-library/pwalign/Meta/Rd.rds
/usr/lib/R/site-library/pwalign/Meta/vignette.rds
/usr/lib/R/site-library/pwalign/NAMESPACE
/usr/lib/R/site-library/pwalign/NEWS
/usr/lib/R/site-library/pwalign/R/pwalign
/usr/lib/R/site-library/pwalign/R/pwalign.rdb
/usr/lib/R/site-library/pwalign/R/pwalign.rdx
/usr/lib/R/site-library/pwalign/unitTests/test_pairwiseAlignment.R
/usr/share/doc/r-bioc-pwalign/changelog.Debian.gz
/usr/share/doc/r-bioc-pwalign/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 13 (Trixie) in the browser Build an image that includes r-bioc-pwalign

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.2.0-3	trixie / main	amd64	Debian 13 · main · amd64	746 KiB	1.1 MiB	pool/main/r/r-bioc-pwalign/r-bioc-pwalign_1.2.0-3_amd64.deb
1.2.0-3	trixie / main	arm64	Debian 13 · main · arm64	745 KiB	1.1 MiB	pool/main/r/r-bioc-pwalign/r-bioc-pwalign_1.2.0-3_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.2.0-3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 860fc9513654401c5b33641f48018fb90bc203abb260dc0756229ba981d54e6b

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '860fc9513654401c5b33641f48018fb90bc203abb260dc0756229ba981d54e6b' 'r-bioc-pwalign_1.2.0-3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.2.0-3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e1b80f6d4958118bc7a8189a3e968bb017fcab089c700805ed342f598fba35b2

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'e1b80f6d4958118bc7a8189a3e968bb017fcab089c700805ed342f598fba35b2' 'r-bioc-pwalign_1.2.0-3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified