Debian 13 (Trixie) native package

r-cran-alakazam

Immunoglobulin Clonal Lineage and Diversity Analysis

Packages / Debian 13 (Trixie) / science / r-cran-alakazam

[Source: r-cran-alakazam]

Package: r-cran-alakazam (1.3.0-1+b1)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [cran.r-project.org]

Immunoglobulin Clonal Lineage and Diversity Analysis

Other Packages Related to r-cran-alakazam:

dep: r-api-4.0
Package not available
dep: [r-cran-ggplot2] (>= 3.4.0)
implementation of the Grammar of Graphics
dep: [r-cran-airr] (>= 1.4.1)
GNU R AIRR data representation reference library
dep: [r-cran-ape]
GNU R package for Analyses of Phylogenetics and Evolution
dep: [r-cran-dplyr] (>= 1.0)
GNU R grammar of data manipulation
dep: [r-cran-igraph] (>= 1.5.0)
GNU R network analysis and visualization
dep: [r-cran-matrix] (>= 1.3-0)
GNU R package of classes for dense and sparse matrices
dep: [r-cran-progress]
GNU R terminal progress bars
dep: [r-cran-rcpp] (>= 0.12.12)
GNU R package for Seamless R and C++ Integration
dep: [r-cran-readr]
GNU R package to read rectangular text data
dep: [r-cran-rlang]
Functions for Base Types and Core R and 'Tidyverse' Features
dep: [r-cran-scales]
Scale functions for visualization
dep: [r-cran-seqinr]
GNU R biological sequences retrieval and analysis
dep: [r-cran-stringi]
GNU R character string processing facilities
dep: [r-cran-tibble]
GNU R Simple Data Frames
dep: [r-cran-tidyr] (>= 1.0)
GNU R package to easily tidy data
dep: [r-bioc-biostrings] (>= 2.56.0)
GNU R string objects representing biological sequences
dep: [r-bioc-genomicalignments] (>= 1.24.0)
BioConductor representation and manipulation of short genomic alignments
dep: [r-bioc-iranges] (>= 2.22.2)
GNU R low-level containers for storing sets of integer ranges
dep: [libc6] (>= 2.17)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3

sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
sug: [r-cran-testthat]
GNU R testsuite

Download r-cran-alakazam

Architecture	Package Size	Installed Size	Files
amd64	2.3 MiB	2.8 MiB	[list of files]
arm64	2.3 MiB	2.8 MiB	[list of files]

Package file paths (58)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/alakazam/CITATION
/usr/lib/R/site-library/alakazam/data/Rdata.rdb
/usr/lib/R/site-library/alakazam/data/Rdata.rds
/usr/lib/R/site-library/alakazam/data/Rdata.rdx
/usr/lib/R/site-library/alakazam/DESCRIPTION
/usr/lib/R/site-library/alakazam/doc/AminoAcids-Vignette.pdf
/usr/lib/R/site-library/alakazam/doc/AminoAcids-Vignette.R
/usr/lib/R/site-library/alakazam/doc/AminoAcids-Vignette.Rmd
/usr/lib/R/site-library/alakazam/doc/Diversity-Vignette.pdf
/usr/lib/R/site-library/alakazam/doc/Diversity-Vignette.R
/usr/lib/R/site-library/alakazam/doc/Diversity-Vignette.Rmd
/usr/lib/R/site-library/alakazam/doc/Fastq-Vignette.pdf
/usr/lib/R/site-library/alakazam/doc/Fastq-Vignette.R
/usr/lib/R/site-library/alakazam/doc/Fastq-Vignette.Rmd
/usr/lib/R/site-library/alakazam/doc/Files-Vignette.pdf
/usr/lib/R/site-library/alakazam/doc/Files-Vignette.R
/usr/lib/R/site-library/alakazam/doc/Files-Vignette.Rmd
/usr/lib/R/site-library/alakazam/doc/GeneUsage-Vignette.pdf
/usr/lib/R/site-library/alakazam/doc/GeneUsage-Vignette.R
/usr/lib/R/site-library/alakazam/doc/GeneUsage-Vignette.Rmd
/usr/lib/R/site-library/alakazam/doc/index.html
/usr/lib/R/site-library/alakazam/doc/Lineage-Vignette.pdf
/usr/lib/R/site-library/alakazam/doc/Lineage-Vignette.R
/usr/lib/R/site-library/alakazam/doc/Lineage-Vignette.Rmd
/usr/lib/R/site-library/alakazam/doc/Topology-Vignette.pdf
/usr/lib/R/site-library/alakazam/doc/Topology-Vignette.R
/usr/lib/R/site-library/alakazam/doc/Topology-Vignette.Rmd
/usr/lib/R/site-library/alakazam/extdata/example_airr.tsv.gz
/usr/lib/R/site-library/alakazam/extdata/example_changeo.tab.gz
/usr/lib/R/site-library/alakazam/extdata/example_quality.fastq
/usr/lib/R/site-library/alakazam/extdata/example_quality.tsv
/usr/lib/R/site-library/alakazam/help/alakazam.rdb
/usr/lib/R/site-library/alakazam/help/alakazam.rdx
/usr/lib/R/site-library/alakazam/help/aliases.rds
/usr/lib/R/site-library/alakazam/help/AnIndex
/usr/lib/R/site-library/alakazam/help/paths.rds
/usr/lib/R/site-library/alakazam/html/00Index.html
/usr/lib/R/site-library/alakazam/html/R.css
/usr/lib/R/site-library/alakazam/INDEX
/usr/lib/R/site-library/alakazam/libs/alakazam.so
/usr/lib/R/site-library/alakazam/Meta/data.rds
/usr/lib/R/site-library/alakazam/Meta/features.rds
/usr/lib/R/site-library/alakazam/Meta/hsearch.rds
/usr/lib/R/site-library/alakazam/Meta/links.rds
/usr/lib/R/site-library/alakazam/Meta/nsInfo.rds
/usr/lib/R/site-library/alakazam/Meta/package.rds
/usr/lib/R/site-library/alakazam/Meta/Rd.rds
/usr/lib/R/site-library/alakazam/Meta/vignette.rds
/usr/lib/R/site-library/alakazam/NAMESPACE
/usr/lib/R/site-library/alakazam/NEWS.md
/usr/lib/R/site-library/alakazam/R/alakazam
/usr/lib/R/site-library/alakazam/R/alakazam.rdb
/usr/lib/R/site-library/alakazam/R/alakazam.rdx
/usr/lib/R/site-library/alakazam/R/sysdata.rdb
/usr/lib/R/site-library/alakazam/R/sysdata.rdx
/usr/share/doc/r-cran-alakazam/changelog.Debian.arm64.gz
/usr/share/doc/r-cran-alakazam/changelog.Debian.gz
/usr/share/doc/r-cran-alakazam/copyright

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

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OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.3.0-1+b1	trixie / main	arm64	Debian 13 · main · arm64	2.3 MiB	2.8 MiB	pool/main/r/r-cran-alakazam/r-cran-alakazam_1.3.0-1+b1_arm64.deb
1.3.0-1	trixie / main	amd64	Debian 13 · main · amd64	2.3 MiB	2.8 MiB	pool/main/r/r-cran-alakazam/r-cran-alakazam_1.3.0-1_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.3.0-1+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: ac3b48c888fd21d226d58268456fff663ce2a55555f63991d8945302ca71e031

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'ac3b48c888fd21d226d58268456fff663ce2a55555f63991d8945302ca71e031' 'r-cran-alakazam_1.3.0-1+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

1.3.0-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: b54192daadfec052475cc2e0ea0dd73b7a4708edd14124f42d32c7ca9dd9d846

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'b54192daadfec052475cc2e0ea0dd73b7a4708edd14124f42d32c7ca9dd9d846' 'r-cran-alakazam_1.3.0-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified