Fedora 44 native package

hmmer

Biosequence analysis using profile hidden Markov models

Packages / Fedora 44 / Unspecified / hmmer

[Source: hmmer]

Package: hmmer (3.3.2-12.fc44)

[Project overview: hmmer]

External Resources:

Homepage: [hmmer.org]

Similar packages:

[hmmer-doc]
Documentation for hmmer
[hmmer-easel]
Easel collection of small tools

Biosequence analysis using profile hidden Markov models

HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).

Other Packages Related to hmmer:

dep: libm.so.6()(64bit)
Package not available
dep: libm.so.6(GLIBC_2.2.5)(64bit)
Package not available
dep: libm.so.6(GLIBC_2.27)(64bit)
Package not available
dep: libm.so.6(GLIBC_2.29)(64bit)
Package not available
dep: rtld(GNU_HASH)
Package not available
dep: libc.so.6(GLIBC_2.38)(64bit)
Package not available

Download hmmer

Architecture	Package Size	Installed Size	Files
x86_64	1.2 MiB	6.5 MiB	[list of files]

Package file paths (81)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/alimask
/usr/bin/hmmalign
/usr/bin/hmmbuild
/usr/bin/hmmconvert
/usr/bin/hmmemit
/usr/bin/hmmfetch
/usr/bin/hmmlogo
/usr/bin/hmmpgmd
/usr/bin/hmmpgmd_shard
/usr/bin/hmmpress
/usr/bin/hmmscan
/usr/bin/hmmsearch
/usr/bin/hmmsim
/usr/bin/hmmstat
/usr/bin/jackhmmer
/usr/bin/makehmmerdb
/usr/bin/nhmmer
/usr/bin/nhmmscan
/usr/bin/phmmer
/usr/lib/.build-id
/usr/lib/.build-id/06
/usr/lib/.build-id/06/bde54121d721581833da277ccf6ffdc386e30a
/usr/lib/.build-id/07
/usr/lib/.build-id/07/01c33db74bde2a539525fd4d205f14f6f03f90
/usr/lib/.build-id/21
/usr/lib/.build-id/21/7b32d1e51b3eb0ae33c8df698a5edfcf0e0f21
/usr/lib/.build-id/26
/usr/lib/.build-id/26/2e8dee84ef37bc11f4cb61374fb1dff0008ecd
/usr/lib/.build-id/43
/usr/lib/.build-id/43/ee522579317bdea44277335a5fb97a44e40d58
/usr/lib/.build-id/4e
/usr/lib/.build-id/4e/f30844e09c12c5da174141d4f3ae6321b23633
/usr/lib/.build-id/5b
/usr/lib/.build-id/5b/d128f3571e5591adddddf16e9d56730719b010
/usr/lib/.build-id/62
/usr/lib/.build-id/62/c50760bf6b2bc745a393c47482ee3cfc95c802
/usr/lib/.build-id/66
/usr/lib/.build-id/66/3796a24f71f845753b0f32b0abe4242c3e2c2b
/usr/lib/.build-id/6a
/usr/lib/.build-id/6a/16108f237ab9b42203a56d2fa889dcf23f6a12
/usr/lib/.build-id/75
/usr/lib/.build-id/75/cd6e1f40dddf09e1ccfca0b49199be3e1017f6
/usr/lib/.build-id/77
/usr/lib/.build-id/77/f2d3d87a4dfa1633325d6df0b2765e06787a56
/usr/lib/.build-id/86
/usr/lib/.build-id/86/b0b00d0bc29cb25af1cde4119ad519f73443d9
/usr/lib/.build-id/88
/usr/lib/.build-id/88/eaf157b10d586d7f6df9c10faa704bc19a0647
/usr/lib/.build-id/97
/usr/lib/.build-id/97/a2901069b16e054aff8d76abdca052276484b8
/usr/lib/.build-id/a1
/usr/lib/.build-id/a1/0a756eed583e3db0348e3af4540d0acfb8da9c
/usr/lib/.build-id/bd
/usr/lib/.build-id/bd/65c7cc392490c258294118254910cf2a02e708
/usr/lib/.build-id/ca
/usr/lib/.build-id/ca/77e3d2ec2423f5eed949b1ae17c138e27618f4
/usr/lib/.build-id/e6
/usr/lib/.build-id/e6/36dfe6fe1dff1df416b57ad2a613f6e880baf0
/usr/share/licenses/hmmer
/usr/share/licenses/hmmer/LICENSE
/usr/share/man/man1/alimask.1.gz
/usr/share/man/man1/hmmalign.1.gz
/usr/share/man/man1/hmmbuild.1.gz
/usr/share/man/man1/hmmc2.1.gz
/usr/share/man/man1/hmmconvert.1.gz
/usr/share/man/man1/hmmemit.1.gz
/usr/share/man/man1/hmmer.1.gz
/usr/share/man/man1/hmmfetch.1.gz
/usr/share/man/man1/hmmlogo.1.gz
/usr/share/man/man1/hmmpgmd.1.gz
/usr/share/man/man1/hmmpgmd_shard.1.gz
/usr/share/man/man1/hmmpress.1.gz
/usr/share/man/man1/hmmscan.1.gz
/usr/share/man/man1/hmmsearch.1.gz
/usr/share/man/man1/hmmsim.1.gz
/usr/share/man/man1/hmmstat.1.gz
/usr/share/man/man1/jackhmmer.1.gz
/usr/share/man/man1/makehmmerdb.1.gz
/usr/share/man/man1/nhmmer.1.gz
/usr/share/man/man1/nhmmscan.1.gz
/usr/share/man/man1/phmmer.1.gz

Field source: Fedora 44 Everything x86_64 revision 44-everything-x86_64:da3845427d188097f6fd71b417a039bdfb8efefc4f38ca44b5cbb94f95a18991

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Fedora 44 in the browser Build an image that includes hmmer

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
3.3.2-12.fc44	44 / everything	x86_64	Fedora 44 · Everything · x86_64	1.2 MiB	6.5 MiB	Packages/h/hmmer-3.3.2-12.fc44.x86_64.rpm

Field source: Fedora 44 Everything x86_64 revision 44-everything-x86_64:da3845427d188097f6fd71b417a039bdfb8efefc4f38ca44b5cbb94f95a18991

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3.3.2-12.fc44 / x86_64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 9dc2a507ff61c69e9af6ddc05710f0b45e3bafeca79246b32f1aa67fc1df038b

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '9dc2a507ff61c69e9af6ddc05710f0b45e3bafeca79246b32f1aa67fc1df038b' 'hmmer-3.3.2-12.fc44.x86_64.rpm' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Fedora 44 Everything x86_64 revision 44-everything-x86_64:da3845427d188097f6fd71b417a039bdfb8efefc4f38ca44b5cbb94f95a18991

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 5/5
Source package or maintainer: 10/10

Recorded total: 100/100

Field source: Fedora 44 Everything x86_64 revision 44-everything-x86_64:da3845427d188097f6fd71b417a039bdfb8efefc4f38ca44b5cbb94f95a18991. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Fedora 44 Everything x86_64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision 44-everything-x86_64:da3845427d188097f6fd71b417a039bdfb8efefc4f38ca44b5cbb94f95a18991
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://mirrors.fedoraproject.org/metalink?repo=fedora-44&arch=x86_64
Signed-object SHA-256
1300b99ac5d04b5561ad901320c8bd59ed1553f4971c3ce2ca48c40242c66676
Signer fingerprint
Not recorded
Keyring revision
RPM-GPG-KEY-fedora-44-primary
SHA-256 93642aec521a1e5e96dd715f7ae0ec0850ebc9de09a94ce03cae5263f26cc18a
Tool and policy
1
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: Not recorded
Expected SHA-256: Not recorded
Observed SHA-256: Not recorded
Result: match verified