Debian 12 (Bookworm) native package

python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)

Packages / Debian 12 (Bookworm) / python / python3-pysam

[Source: python-pysam]

Package: python3-pysam (0.20.0+ds-3+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [pysam.readthedocs.org]

Similar packages:

[python-pysam-tests]
interface for the SAM/BAM sequence alignment and mapping format (test data)

interface for the SAM/BAM sequence alignment and mapping format (Python 3)

Other Packages Related to python3-pysam:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libhts3] (>= 1.16)
C library for high-throughput sequencing data formats
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime
dep: [python3] (<< 3.12)
interactive high-level object-oriented language (default python3 version)
dep: [python3] (>= 3.11~)
interactive high-level object-oriented language (default python3 version)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)

Download python3-pysam

Architecture	Package Size	Installed Size	Files
amd64	1.6 MiB	5.6 MiB	[list of files]
arm64	1.4 MiB	5.7 MiB	[list of files]

Caminhos de arquivo do pacote (124)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/python3/dist-packages/pysam-0.20.0.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/pysam-0.20.0.egg-info/not-zip-safe
/usr/lib/python3/dist-packages/pysam-0.20.0.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/pysam-0.20.0.egg-info/top_level.txt
/usr/lib/python3/dist-packages/pysam/bcftools.py
/usr/lib/python3/dist-packages/pysam/cbcftools_util.h
/usr/lib/python3/dist-packages/pysam/config.py
/usr/lib/python3/dist-packages/pysam/csamtools_util.h
/usr/lib/python3/dist-packages/pysam/htslib_util.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/abuf.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/bam2bcf.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/bam_sample.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/bcftools.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/bcftools.pysam.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/bin.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/call.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/cols.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/config.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/convert.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/dbuf.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/dist.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/extsort.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/filter.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/gvcf.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/hclust.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/hex.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/HMM.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/khash_str2str.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/kheap.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/kmin.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/mw.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/ploidy.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/prob1.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/rbuf.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/regidx.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/smpl_ilist.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/str_finder.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/tsv2vcf.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/utlist.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/variantkey.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/vcfbuf.h
/usr/lib/python3/dist-packages/pysam/include/bcftools/vcmp.h
/usr/lib/python3/dist-packages/pysam/include/__init__.py
/usr/lib/python3/dist-packages/pysam/include/samtools/bam_ampliconclip.h
/usr/lib/python3/dist-packages/pysam/include/samtools/bam.h
/usr/lib/python3/dist-packages/pysam/include/samtools/bam_lpileup.h
/usr/lib/python3/dist-packages/pysam/include/samtools/bam_plbuf.h
/usr/lib/python3/dist-packages/pysam/include/samtools/bedidx.h
/usr/lib/python3/dist-packages/pysam/include/samtools/config.h
/usr/lib/python3/dist-packages/pysam/include/samtools/consensus_pileup.h
/usr/lib/python3/dist-packages/pysam/include/samtools/sam_opts.h
/usr/lib/python3/dist-packages/pysam/include/samtools/sample.h
/usr/lib/python3/dist-packages/pysam/include/samtools/samtools_config_vars.h
/usr/lib/python3/dist-packages/pysam/include/samtools/samtools.h
/usr/lib/python3/dist-packages/pysam/include/samtools/samtools.pysam.h
/usr/lib/python3/dist-packages/pysam/include/samtools/splaysort.h
/usr/lib/python3/dist-packages/pysam/include/samtools/stats_isize.h
/usr/lib/python3/dist-packages/pysam/include/samtools/tmp_file.h
/usr/lib/python3/dist-packages/pysam/__init__.py
/usr/lib/python3/dist-packages/pysam/libcalignedsegment.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcalignedsegment.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcalignedsegment.pxd
/usr/lib/python3/dist-packages/pysam/libcalignedsegment.pyi
/usr/lib/python3/dist-packages/pysam/libcalignmentfile.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcalignmentfile.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcalignmentfile.pxd
/usr/lib/python3/dist-packages/pysam/libcalignmentfile.pyi
/usr/lib/python3/dist-packages/pysam/libcbcf.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcbcf.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcbcf.pxd
/usr/lib/python3/dist-packages/pysam/libcbcf.pyi
/usr/lib/python3/dist-packages/pysam/libcbcftools.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcbcftools.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcbcftools.pxd
/usr/lib/python3/dist-packages/pysam/libcbcftools.pyi
/usr/lib/python3/dist-packages/pysam/libcbgzf.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcbgzf.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcbgzf.pyi
/usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcfaidx.pxd
/usr/lib/python3/dist-packages/pysam/libcfaidx.pyi
/usr/lib/python3/dist-packages/pysam/libchtslib.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libchtslib.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libchtslib.pxd
/usr/lib/python3/dist-packages/pysam/libchtslib.pyi
/usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcsamfile.pxd
/usr/lib/python3/dist-packages/pysam/libcsamfile.pyi
/usr/lib/python3/dist-packages/pysam/libcsamtools.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcsamtools.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcsamtools.pxd
/usr/lib/python3/dist-packages/pysam/libcsamtools.pyi
/usr/lib/python3/dist-packages/pysam/libctabix.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libctabix.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libctabixproxies.pxd
/usr/lib/python3/dist-packages/pysam/libctabixproxies.pyi
/usr/lib/python3/dist-packages/pysam/libctabix.pxd
/usr/lib/python3/dist-packages/pysam/libctabix.pyi
/usr/lib/python3/dist-packages/pysam/libcutils.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcutils.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcutils.pxd
/usr/lib/python3/dist-packages/pysam/libcutils.pyi
/usr/lib/python3/dist-packages/pysam/libcvcf.cpython-311-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcvcf.cpython-311-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libcvcf.pxd
/usr/lib/python3/dist-packages/pysam/libcvcf.pyi
/usr/lib/python3/dist-packages/pysam/Pileup.py
/usr/lib/python3/dist-packages/pysam/pysam_stream.h
/usr/lib/python3/dist-packages/pysam/pysam_util.h
/usr/lib/python3/dist-packages/pysam/py.typed
/usr/lib/python3/dist-packages/pysam/samtools.py
/usr/lib/python3/dist-packages/pysam/utils.py
/usr/lib/python3/dist-packages/pysam/version.h
/usr/lib/python3/dist-packages/pysam/version.py
/usr/lib/python3/dist-packages/pysam/version.pyi
/usr/share/doc/python3-pysam/changelog.Debian.amd64.gz
/usr/share/doc/python3-pysam/changelog.Debian.arm64.gz
/usr/share/doc/python3-pysam/changelog.Debian.gz
/usr/share/doc/python3-pysam/copyright
/usr/share/lintian/overrides/python3-pysam

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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Experimentar Debian 12 (Bookworm) no navegador Construir uma imagem que inclui python3-pysam

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0.20.0+ds-3+b1	bookworm / main	amd64	Debian 12 · main · amd64	1.6 MiB	5.6 MiB	pool/main/p/python-pysam/python3-pysam_0.20.0+ds-3+b1_amd64.deb
0.20.0+ds-3+b1	bookworm / main	arm64	Debian 12 · main · arm64	1.4 MiB	5.7 MiB	pool/main/p/python-pysam/python3-pysam_0.20.0+ds-3+b1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.20.0+ds-3+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 79fc87c794c35e89d5d685c2298f2eba2fb724945637f52377802077f6f623c6

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '79fc87c794c35e89d5d685c2298f2eba2fb724945637f52377802077f6f623c6' 'python3-pysam_0.20.0+ds-3+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

0.20.0+ds-3+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: f7a1390592ec10a092efd8d1bc25c34030e94d172f46ef27fb77d71e128c0f23

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'f7a1390592ec10a092efd8d1bc25c34030e94d172f46ef27fb77d71e128c0f23' 'python3-pysam_0.20.0+ds-3+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified