Debian 13 (Trixie) native package

atac

genome assembly-to-assembly comparison

Packages / Debian 13 (Trixie) / science / atac

[Source: kmer]

Package: atac (0~20150903+r2013-9+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [kmer.sourceforge.net]

Similar packages:

[kmer-examples]
sample data for kmer suite of tools for DNA sequence analysis
[leaff]
biological sequence library utilities and applications
[libkmer-dev]
suite of tools for DNA sequence analysis (development lib)
[libmeryl-dev]
in- and out-of-core kmer counting and utilities (development lib)
[meryl]
in- and out-of-core kmer counting and utilities
[sim4db]
batch spliced alignment of cDNA sequences to a target genome

genome assembly-to-assembly comparison

Other Packages Related to atac:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 5.2)
GNU Standard C++ Library v3
dep: [python3] (<< 3.14)
interactive high-level object-oriented language (default python3 version)
dep: [python3] (>= 3.13~)
interactive high-level object-oriented language (default python3 version)
dep: [python3.13]
Interactive high-level object-oriented language (version 3.13)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language
dep: [libfile-which-perl]
Perl module for searching paths for executable programs
dep: [leaff]
biological sequence library utilities and applications
dep: [meryl]
in- and out-of-core kmer counting and utilities
dep: [gnuplot]
Command-line driven interactive plotting program.

rec: [kmer-examples]
sample data for kmer suite of tools for DNA sequence analysis

Download atac

Architecture	Package Size	Installed Size	Files
amd64	379 KiB	2.7 MiB	[list of files]
arm64	358 KiB	3.3 MiB	[list of files]

Caminhos de arquivo do pacote (47)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/atac
/usr/lib/atac/bin/AtacDriver.py
/usr/lib/atac/bin/cleanAtac
/usr/lib/atac/bin/clumpMaker
/usr/lib/atac/bin/coalesceMatches
/usr/lib/atac/bin/correctGaps
/usr/lib/atac/bin/extractSequence
/usr/lib/atac/bin/extractUnmapped
/usr/lib/atac/bin/gapShifter
/usr/lib/atac/bin/happy-clones-span-clumps
/usr/lib/atac/bin/heavychains
/usr/lib/atac/bin/lengthFilter
/usr/lib/atac/bin/makeplot.pl
/usr/lib/atac/bin/matchExtender
/usr/lib/atac/bin/mismatchCounter
/usr/lib/atac/bin/overlap
/usr/lib/atac/bin/projectFeatures
/usr/lib/atac/bin/seatac
/usr/lib/atac/bin/statsGenerator
/usr/lib/atac/bin/testAtac
/usr/lib/atac/bin/uniqueFilter
/usr/lib/atac/lib/AtacDriver.py
/usr/lib/atac/lib/AtacFile.py
/usr/lib/atac/lib/dedashMatches.py
/usr/lib/atac/lib/DNA.py
/usr/lib/atac/lib/fillIntraRunGaps.py
/usr/lib/atac/lib/filter-heavychains.so
/usr/lib/atac/lib/filter-nop.so
/usr/lib/atac/lib/halign.so
/usr/lib/atac/lib/IdxStore.py
/usr/lib/atac/lib/localAlignerInterface.so
/usr/lib/atac/lib/MatchRecord.py
/usr/lib/atac/lib/mkstats.py
/usr/lib/atac/lib/MyFile.py
/usr/lib/atac/lib/PerfectRuns.py
/usr/lib/atac/lib/squeezeIntraRunGaps.py
/usr/lib/atac/lib/TrimMatchOverlaps.py
/usr/lib/atac/lib/UniqueFilter.py
/usr/share/doc/atac/atac-unit-test
/usr/share/doc/atac/changelog.Debian.amd64.gz
/usr/share/doc/atac/changelog.Debian.arm64.gz
/usr/share/doc/atac/changelog.Debian.gz
/usr/share/doc/atac/copyright
/usr/share/doc/atac/README.atac
/usr/share/doc/atac/README.test
/usr/share/man/man1/atac.1.gz
/usr/share/python3/runtime.d/atac.rtupdate

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 13 (Trixie) no navegador Construir uma imagem que inclui atac

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0~20150903+r2013-9+b1	trixie / main	amd64	Debian 13 · main · amd64	379 KiB	2.7 MiB	pool/main/k/kmer/atac_0~20150903+r2013-9+b1_amd64.deb
0~20150903+r2013-9+b1	trixie / main	arm64	Debian 13 · main · arm64	358 KiB	3.3 MiB	pool/main/k/kmer/atac_0~20150903+r2013-9+b1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0~20150903+r2013-9+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: ae25098799ada1148a279156138aa133fc52880330c19c1edf70f4d4c3976281

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'ae25098799ada1148a279156138aa133fc52880330c19c1edf70f4d4c3976281' 'atac_0~20150903+r2013-9+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

0~20150903+r2013-9+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: c44ba1b6fa4cadb1c6f3a8b652a586f40aeb1004ee7c88179a38cd7724a939ae

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'c44ba1b6fa4cadb1c6f3a8b652a586f40aeb1004ee7c88179a38cd7724a939ae' 'atac_0~20150903+r2013-9+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified