Debian 13 (Trixie) native package

atropos

NGS read trimming tool that is specific, sensitive, and speedy

Packages / Debian 13 (Trixie) / science / atropos

[Source: atropos]

Package: atropos (1.1.32+dfsg-2+b2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

NGS read trimming tool that is specific, sensitive, and speedy

Other Packages Related to atropos:

dep: [libc6] (>= 2.4)
GNU C Library: Shared libraries
dep: [python3] (<< 3.14)
interactive high-level object-oriented language (default python3 version)
dep: [python3] (>= 3.13~)
interactive high-level object-oriented language (default python3 version)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [python3-pysam]
interface for the SAM/BAM sequence alignment and mapping format (Python 3)

rec: [python3-jinja2]
small but fast and easy to use stand-alone template engine

Download atropos

Architecture	Package Size	Installed Size	Files
amd64	220 KiB	936 KiB	[list of files]
arm64	205 KiB	995 KiB	[list of files]

Caminhos de arquivo do pacote (52)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/atropos
/usr/lib/python3/dist-packages/atropos-1.1.32.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/atropos-1.1.32.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/atropos-1.1.32.egg-info/requires.txt
/usr/lib/python3/dist-packages/atropos-1.1.32.egg-info/top_level.txt
/usr/lib/python3/dist-packages/atropos/adapters/__init__.py
/usr/lib/python3/dist-packages/atropos/adapters/sequencing_adapters.fa
/usr/lib/python3/dist-packages/atropos/align/_align.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/atropos/align/_align.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/atropos/align/__init__.py
/usr/lib/python3/dist-packages/atropos/commands/base.py
/usr/lib/python3/dist-packages/atropos/commands/cli.py
/usr/lib/python3/dist-packages/atropos/commands/detect/cli.py
/usr/lib/python3/dist-packages/atropos/commands/detect/__init__.py
/usr/lib/python3/dist-packages/atropos/commands/detect/reports.py
/usr/lib/python3/dist-packages/atropos/commands/error/cli.py
/usr/lib/python3/dist-packages/atropos/commands/error/__init__.py
/usr/lib/python3/dist-packages/atropos/commands/error/reports.py
/usr/lib/python3/dist-packages/atropos/commands/__init__.py
/usr/lib/python3/dist-packages/atropos/commands/legacy_report.py
/usr/lib/python3/dist-packages/atropos/commands/multicore.py
/usr/lib/python3/dist-packages/atropos/commands/qc/cli.py
/usr/lib/python3/dist-packages/atropos/commands/qc/__init__.py
/usr/lib/python3/dist-packages/atropos/commands/qc/reports.py
/usr/lib/python3/dist-packages/atropos/commands/reports.py
/usr/lib/python3/dist-packages/atropos/commands/stats.py
/usr/lib/python3/dist-packages/atropos/commands/trim/cli.py
/usr/lib/python3/dist-packages/atropos/commands/trim/filters.py
/usr/lib/python3/dist-packages/atropos/commands/trim/__init__.py
/usr/lib/python3/dist-packages/atropos/commands/trim/modifiers.py
/usr/lib/python3/dist-packages/atropos/commands/trim/multicore.py
/usr/lib/python3/dist-packages/atropos/commands/trim/_qualtrim.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/atropos/commands/trim/_qualtrim.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/atropos/commands/trim/qualtrim.py
/usr/lib/python3/dist-packages/atropos/commands/trim/reports.py
/usr/lib/python3/dist-packages/atropos/commands/trim/writers.py
/usr/lib/python3/dist-packages/atropos/__init__.py
/usr/lib/python3/dist-packages/atropos/io/compression.py
/usr/lib/python3/dist-packages/atropos/io/__init__.py
/usr/lib/python3/dist-packages/atropos/io/progress.py
/usr/lib/python3/dist-packages/atropos/io/_seqio.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/atropos/io/_seqio.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/atropos/io/seqio.py
/usr/lib/python3/dist-packages/atropos/util/colorspace.py
/usr/lib/python3/dist-packages/atropos/util/__init__.py
/usr/lib/python3/dist-packages/atropos/_version.py
/usr/share/doc/atropos/changelog.Debian.amd64.gz
/usr/share/doc/atropos/changelog.Debian.arm64.gz
/usr/share/doc/atropos/changelog.Debian.gz
/usr/share/doc/atropos/changelog.gz
/usr/share/doc/atropos/copyright
/usr/share/man/man1/atropos.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 13 (Trixie) no navegador Construir uma imagem que inclui atropos

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.1.32+dfsg-2+b2	trixie / main	amd64	Debian 13 · main · amd64	220 KiB	936 KiB	pool/main/a/atropos/atropos_1.1.32+dfsg-2+b2_amd64.deb
1.1.32+dfsg-2+b2	trixie / main	arm64	Debian 13 · main · arm64	205 KiB	995 KiB	pool/main/a/atropos/atropos_1.1.32+dfsg-2+b2_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.1.32+dfsg-2+b2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 10932dc75f05e142b2774d73b0212641db58a1544034d5a9e1acbe5ac099ee3d

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '10932dc75f05e142b2774d73b0212641db58a1544034d5a9e1acbe5ac099ee3d' 'atropos_1.1.32+dfsg-2+b2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.1.32+dfsg-2+b2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 5b225682e4d21c02041104ab42146edd0b1e53dd981442a643b7b6dfcdf249bd

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '5b225682e4d21c02041104ab42146edd0b1e53dd981442a643b7b6dfcdf249bd' 'atropos_1.1.32+dfsg-2+b2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified