Debian 13 (Trixie) native package

bcftools

genomic variant calling and manipulation of VCF/BCF files

Packages / Debian 13 (Trixie) / science / bcftools

Package: bcftools (1.21-1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [samtools.github.io]

genomic variant calling and manipulation of VCF/BCF files

Other Packages Related to bcftools:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libhts3t64] (>= 1.17)
C library for high-throughput sequencing data formats

rec: [perl]
Larry Wall's Practical Extraction and Report Language
rec: [python3-gffutils]
Work with GFF and GTF files in a flexible database framework
rec: [python3-matplotlib]
Python based plotting system in a style similar to Matlab

sug: [python3]
interactive high-level object-oriented language (default python3 version)
sug: [python3-numpy]
Python library for numerical computations (Python 3)
sug: [texlive-latex-recommended]
TeX Live: LaTeX recommended packages

Download bcftools

Architecture	Package Size	Installed Size	Files
amd64	765 KiB	2.7 MiB	[list of files]
arm64	690 KiB	4.1 MiB	[list of files]

Caminhos de arquivo do pacote (94)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/bcftools
/usr/bin/color-chrs.pl
/usr/bin/gff2gff.py
/usr/bin/guess-ploidy.py
/usr/bin/plot-roh.py
/usr/bin/plot-vcfstats
/usr/bin/run-roh.pl
/usr/bin/vcfutils.pl
/usr/lib/aarch64-linux-gnu/bcftools/ad-bias.so
/usr/lib/aarch64-linux-gnu/bcftools/add-variantkey.so
/usr/lib/aarch64-linux-gnu/bcftools/af-dist.so
/usr/lib/aarch64-linux-gnu/bcftools/allele-length.so
/usr/lib/aarch64-linux-gnu/bcftools/check-ploidy.so
/usr/lib/aarch64-linux-gnu/bcftools/check-sparsity.so
/usr/lib/aarch64-linux-gnu/bcftools/color-chrs.so
/usr/lib/aarch64-linux-gnu/bcftools/contrast.so
/usr/lib/aarch64-linux-gnu/bcftools/counts.so
/usr/lib/aarch64-linux-gnu/bcftools/dosage.so
/usr/lib/aarch64-linux-gnu/bcftools/fill-AN-AC.so
/usr/lib/aarch64-linux-gnu/bcftools/fill-from-fasta.so
/usr/lib/aarch64-linux-gnu/bcftools/fill-tags.so
/usr/lib/aarch64-linux-gnu/bcftools/fixploidy.so
/usr/lib/aarch64-linux-gnu/bcftools/fixref.so
/usr/lib/aarch64-linux-gnu/bcftools/frameshifts.so
/usr/lib/aarch64-linux-gnu/bcftools/GTisec.so
/usr/lib/aarch64-linux-gnu/bcftools/GTsubset.so
/usr/lib/aarch64-linux-gnu/bcftools/guess-ploidy.so
/usr/lib/aarch64-linux-gnu/bcftools/gvcfz.so
/usr/lib/aarch64-linux-gnu/bcftools/impute-info.so
/usr/lib/aarch64-linux-gnu/bcftools/indel-stats.so
/usr/lib/aarch64-linux-gnu/bcftools/isecGT.so
/usr/lib/aarch64-linux-gnu/bcftools/mendelian2.so
/usr/lib/aarch64-linux-gnu/bcftools/missing2ref.so
/usr/lib/aarch64-linux-gnu/bcftools/parental-origin.so
/usr/lib/aarch64-linux-gnu/bcftools/prune.so
/usr/lib/aarch64-linux-gnu/bcftools/remove-overlaps.so
/usr/lib/aarch64-linux-gnu/bcftools/scatter.so
/usr/lib/aarch64-linux-gnu/bcftools/setGT.so
/usr/lib/aarch64-linux-gnu/bcftools/smpl-stats.so
/usr/lib/aarch64-linux-gnu/bcftools/split.so
/usr/lib/aarch64-linux-gnu/bcftools/split-vep.so
/usr/lib/aarch64-linux-gnu/bcftools/tag2tag.so
/usr/lib/aarch64-linux-gnu/bcftools/trio-dnm2.so
/usr/lib/aarch64-linux-gnu/bcftools/trio-stats.so
/usr/lib/aarch64-linux-gnu/bcftools/trio-switch-rate.so
/usr/lib/aarch64-linux-gnu/bcftools/variant-distance.so
/usr/lib/aarch64-linux-gnu/bcftools/variantkey-hex.so
/usr/lib/x86_64-linux-gnu/bcftools/ad-bias.so
/usr/lib/x86_64-linux-gnu/bcftools/add-variantkey.so
/usr/lib/x86_64-linux-gnu/bcftools/af-dist.so
/usr/lib/x86_64-linux-gnu/bcftools/allele-length.so
/usr/lib/x86_64-linux-gnu/bcftools/check-ploidy.so
/usr/lib/x86_64-linux-gnu/bcftools/check-sparsity.so
/usr/lib/x86_64-linux-gnu/bcftools/color-chrs.so
/usr/lib/x86_64-linux-gnu/bcftools/contrast.so
/usr/lib/x86_64-linux-gnu/bcftools/counts.so
/usr/lib/x86_64-linux-gnu/bcftools/dosage.so
/usr/lib/x86_64-linux-gnu/bcftools/fill-AN-AC.so
/usr/lib/x86_64-linux-gnu/bcftools/fill-from-fasta.so
/usr/lib/x86_64-linux-gnu/bcftools/fill-tags.so
/usr/lib/x86_64-linux-gnu/bcftools/fixploidy.so
/usr/lib/x86_64-linux-gnu/bcftools/fixref.so
/usr/lib/x86_64-linux-gnu/bcftools/frameshifts.so
/usr/lib/x86_64-linux-gnu/bcftools/GTisec.so
/usr/lib/x86_64-linux-gnu/bcftools/GTsubset.so
/usr/lib/x86_64-linux-gnu/bcftools/guess-ploidy.so
/usr/lib/x86_64-linux-gnu/bcftools/gvcfz.so
/usr/lib/x86_64-linux-gnu/bcftools/impute-info.so
/usr/lib/x86_64-linux-gnu/bcftools/indel-stats.so
/usr/lib/x86_64-linux-gnu/bcftools/isecGT.so
/usr/lib/x86_64-linux-gnu/bcftools/mendelian2.so
/usr/lib/x86_64-linux-gnu/bcftools/missing2ref.so
/usr/lib/x86_64-linux-gnu/bcftools/parental-origin.so
/usr/lib/x86_64-linux-gnu/bcftools/prune.so
/usr/lib/x86_64-linux-gnu/bcftools/remove-overlaps.so
/usr/lib/x86_64-linux-gnu/bcftools/scatter.so
/usr/lib/x86_64-linux-gnu/bcftools/setGT.so
/usr/lib/x86_64-linux-gnu/bcftools/smpl-stats.so
/usr/lib/x86_64-linux-gnu/bcftools/split.so
/usr/lib/x86_64-linux-gnu/bcftools/split-vep.so
/usr/lib/x86_64-linux-gnu/bcftools/tag2tag.so
/usr/lib/x86_64-linux-gnu/bcftools/trio-dnm2.so
/usr/lib/x86_64-linux-gnu/bcftools/trio-stats.so
/usr/lib/x86_64-linux-gnu/bcftools/trio-switch-rate.so
/usr/lib/x86_64-linux-gnu/bcftools/variant-distance.so
/usr/lib/x86_64-linux-gnu/bcftools/variantkey-hex.so
/usr/share/doc/bcftools/changelog.Debian.gz
/usr/share/doc/bcftools/copyright
/usr/share/doc/bcftools/README
/usr/share/lintian/overrides/bcftools
/usr/share/man/man1/bcftools.1.gz
/usr/share/man/man1/color-chrs.pl.1.gz
/usr/share/man/man1/plot-vcfstats.1.gz
/usr/share/man/man1/vcfutils.pl.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 13 (Trixie) no navegador Construir uma imagem que inclui bcftools

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.21-1	trixie / main	amd64	Debian 13 · main · amd64	765 KiB	2.7 MiB	pool/main/b/bcftools/bcftools_1.21-1_amd64.deb
1.21-1	trixie / main	arm64	Debian 13 · main · arm64	690 KiB	4.1 MiB	pool/main/b/bcftools/bcftools_1.21-1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.21-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 764405ce5c48f8779313753b0f3c9d791b46081a7d2f88a019e96691019c902b

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '764405ce5c48f8779313753b0f3c9d791b46081a7d2f88a019e96691019c902b' 'bcftools_1.21-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.21-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 7d436e7b2aec25928914d9c437701a8dda173abd2a533372b96a171aab57ea93

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '7d436e7b2aec25928914d9c437701a8dda173abd2a533372b96a171aab57ea93' 'bcftools_1.21-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified