Debian 13 (Trixie) native package

hhsuite

sensitive protein sequence searching based on HMM-HMM alignment

Packages / Debian 13 (Trixie) / science / hhsuite

[Source: hhsuite]

Package: hhsuite (3.3.0+ds-8+b3)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [toolkit.tuebingen.mpg.de]

Similar packages:

[hhsuite-data]
sensitive protein sequence searching based on HMM-HMM alignment (data)

sensitive protein sequence searching based on HMM-HMM alignment

Other Packages Related to hhsuite:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libgomp1] (>= 6)
GCC OpenMP (GOMP) support library
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language
dep: [hhsuite-data] (= 3.3.0+ds-8)
sensitive protein sequence searching based on HMM-HMM alignment (data)
dep: [python3]
interactive high-level object-oriented language (default python3 version)

Download hhsuite

Architecture	Package Size	Installed Size	Files
amd64	54 MiB	457 MiB	[list of files]
arm64	9.9 MiB	76 MiB	[list of files]

Caminhos de arquivo do pacote (166)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/a3m_database_extract
/usr/bin/a3m_database_filter
/usr/bin/a3m_database_reduce
/usr/bin/a3m_extract
/usr/bin/a3m_reduce
/usr/bin/ffindex_apply
/usr/bin/ffindex_build
/usr/bin/ffindex_from_fasta
/usr/bin/ffindex_from_fasta_with_split
/usr/bin/ffindex_get
/usr/bin/ffindex_modify
/usr/bin/ffindex_order
/usr/bin/ffindex_reduce
/usr/bin/ffindex_unpack
/usr/bin/hhalign
/usr/bin/hhalign_omp
/usr/bin/hhblits
/usr/bin/hhblits_ca3m
/usr/bin/hhblits_omp
/usr/bin/hhconsensus
/usr/bin/hhfilter
/usr/bin/hhmake
/usr/bin/hhsearch
/usr/bin/hhsearch_omp
/usr/libexec/hhsuite/a3m_database_extract-avx
/usr/libexec/hhsuite/a3m_database_extract-avx2
/usr/libexec/hhsuite/a3m_database_extract-plain
/usr/libexec/hhsuite/a3m_database_extract-sse3
/usr/libexec/hhsuite/a3m_database_extract-sse4.1
/usr/libexec/hhsuite/a3m_database_extract-ssse3
/usr/libexec/hhsuite/a3m_database_filter-avx
/usr/libexec/hhsuite/a3m_database_filter-avx2
/usr/libexec/hhsuite/a3m_database_filter-plain
/usr/libexec/hhsuite/a3m_database_filter-sse3
/usr/libexec/hhsuite/a3m_database_filter-sse4.1
/usr/libexec/hhsuite/a3m_database_filter-ssse3
/usr/libexec/hhsuite/a3m_database_reduce-avx
/usr/libexec/hhsuite/a3m_database_reduce-avx2
/usr/libexec/hhsuite/a3m_database_reduce-plain
/usr/libexec/hhsuite/a3m_database_reduce-sse3
/usr/libexec/hhsuite/a3m_database_reduce-sse4.1
/usr/libexec/hhsuite/a3m_database_reduce-ssse3
/usr/libexec/hhsuite/a3m_extract-avx
/usr/libexec/hhsuite/a3m_extract-avx2
/usr/libexec/hhsuite/a3m_extract-plain
/usr/libexec/hhsuite/a3m_extract-sse3
/usr/libexec/hhsuite/a3m_extract-sse4.1
/usr/libexec/hhsuite/a3m_extract-ssse3
/usr/libexec/hhsuite/a3m_reduce-avx
/usr/libexec/hhsuite/a3m_reduce-avx2
/usr/libexec/hhsuite/a3m_reduce-plain
/usr/libexec/hhsuite/a3m_reduce-sse3
/usr/libexec/hhsuite/a3m_reduce-sse4.1
/usr/libexec/hhsuite/a3m_reduce-ssse3
/usr/libexec/hhsuite/bin/cstranslate
/usr/libexec/hhsuite/cstranslate-avx
/usr/libexec/hhsuite/cstranslate-avx2
/usr/libexec/hhsuite/cstranslate-plain
/usr/libexec/hhsuite/cstranslate-sse3
/usr/libexec/hhsuite/cstranslate-sse4.1
/usr/libexec/hhsuite/cstranslate-ssse3
/usr/libexec/hhsuite/hhalign-avx
/usr/libexec/hhsuite/hhalign-avx2
/usr/libexec/hhsuite/hhalign_omp-avx
/usr/libexec/hhsuite/hhalign_omp-avx2
/usr/libexec/hhsuite/hhalign_omp-plain
/usr/libexec/hhsuite/hhalign_omp-sse3
/usr/libexec/hhsuite/hhalign_omp-sse4.1
/usr/libexec/hhsuite/hhalign_omp-ssse3
/usr/libexec/hhsuite/hhalign-plain
/usr/libexec/hhsuite/hhalign-sse3
/usr/libexec/hhsuite/hhalign-sse4.1
/usr/libexec/hhsuite/hhalign-ssse3
/usr/libexec/hhsuite/hhblits-avx
/usr/libexec/hhsuite/hhblits-avx2
/usr/libexec/hhsuite/hhblits_ca3m-avx
/usr/libexec/hhsuite/hhblits_ca3m-avx2
/usr/libexec/hhsuite/hhblits_ca3m-plain
/usr/libexec/hhsuite/hhblits_ca3m-sse3
/usr/libexec/hhsuite/hhblits_ca3m-sse4.1
/usr/libexec/hhsuite/hhblits_ca3m-ssse3
/usr/libexec/hhsuite/hhblits_omp-avx
/usr/libexec/hhsuite/hhblits_omp-avx2
/usr/libexec/hhsuite/hhblits_omp-plain
/usr/libexec/hhsuite/hhblits_omp-sse3
/usr/libexec/hhsuite/hhblits_omp-sse4.1
/usr/libexec/hhsuite/hhblits_omp-ssse3
/usr/libexec/hhsuite/hhblits-plain
/usr/libexec/hhsuite/hhblits-sse3
/usr/libexec/hhsuite/hhblits-sse4.1
/usr/libexec/hhsuite/hhblits-ssse3
/usr/libexec/hhsuite/hhconsensus-avx
/usr/libexec/hhsuite/hhconsensus-avx2
/usr/libexec/hhsuite/hhconsensus-plain
/usr/libexec/hhsuite/hhconsensus-sse3
/usr/libexec/hhsuite/hhconsensus-sse4.1
/usr/libexec/hhsuite/hhconsensus-ssse3
/usr/libexec/hhsuite/hhfilter-avx
/usr/libexec/hhsuite/hhfilter-avx2
/usr/libexec/hhsuite/hhfilter-plain
/usr/libexec/hhsuite/hhfilter-sse3
/usr/libexec/hhsuite/hhfilter-sse4.1
/usr/libexec/hhsuite/hhfilter-ssse3
/usr/libexec/hhsuite/hhmake-avx
/usr/libexec/hhsuite/hhmake-avx2
/usr/libexec/hhsuite/hhmake-plain
/usr/libexec/hhsuite/hhmake-sse3
/usr/libexec/hhsuite/hhmake-sse4.1
/usr/libexec/hhsuite/hhmake-ssse3
/usr/libexec/hhsuite/hhsearch-avx
/usr/libexec/hhsuite/hhsearch-avx2
/usr/libexec/hhsuite/hhsearch_omp-avx
/usr/libexec/hhsuite/hhsearch_omp-avx2
/usr/libexec/hhsuite/hhsearch_omp-plain
/usr/libexec/hhsuite/hhsearch_omp-sse3
/usr/libexec/hhsuite/hhsearch_omp-sse4.1
/usr/libexec/hhsuite/hhsearch_omp-ssse3
/usr/libexec/hhsuite/hhsearch-plain
/usr/libexec/hhsuite/hhsearch-sse3
/usr/libexec/hhsuite/hhsearch-sse4.1
/usr/libexec/hhsuite/hhsearch-ssse3
/usr/libexec/hhsuite/simd-dispatch
/usr/lib/hh
/usr/lib/hhsuite/data/do_not_delete
/usr/lib/hhsuite/data/do_not_delete.phr
/usr/lib/hhsuite/data/do_not_delete.pin
/usr/lib/hhsuite/data/do_not_delete.psq
/usr/lib/hhsuite/scripts
/usr/share/doc/hhsuite/changelog.Debian.amd64.gz
/usr/share/doc/hhsuite/changelog.Debian.arm64.gz
/usr/share/doc/hhsuite/changelog.Debian.gz
/usr/share/doc/hhsuite/copyright
/usr/share/doc/hhsuite/examples/query.a3m
/usr/share/doc/hhsuite/examples/query.hhm
/usr/share/doc/hhsuite/examples/query.hhr
/usr/share/doc/hhsuite/examples/query.seq
/usr/share/doc/hhsuite/README.md.gz
/usr/share/hhsuite/scripts/a3m.py
/usr/share/hhsuite/scripts/addss.pl
/usr/share/hhsuite/scripts/Align.pm
/usr/share/hhsuite/scripts/check_a3m.py
/usr/share/hhsuite/scripts/cif2fasta.py
/usr/share/hhsuite/scripts/create_profile_from_hhm.pl
/usr/share/hhsuite/scripts/create_profile_from_hmmer.pl
/usr/share/hhsuite/scripts/ffindex.py
/usr/share/hhsuite/scripts/get_a3m_size.py
/usr/share/hhsuite/scripts/hhmakemodel.pl
/usr/share/hhsuite/scripts/hhmakemodel.py
/usr/share/hhsuite/scripts/HHPaths.pm
/usr/share/hhsuite/scripts/hh_reader.py
/usr/share/hhsuite/scripts/hhsuitedb.py
/usr/share/hhsuite/scripts/mergeali.pl
/usr/share/hhsuite/scripts/multithread.pl
/usr/share/hhsuite/scripts/pdb2fasta.pl
/usr/share/hhsuite/scripts/pdbfilter.pl
/usr/share/hhsuite/scripts/pdbfilter.py
/usr/share/hhsuite/scripts/reformat.pl
/usr/share/hhsuite/scripts/renumberpdb.pl
/usr/share/hhsuite/scripts/splitfasta.pl
/usr/share/man/man1/hhalign.1.gz
/usr/share/man/man1/hhblits.1.gz
/usr/share/man/man1/hhblits_omp.1.gz
/usr/share/man/man1/hhconsensus.1.gz
/usr/share/man/man1/hhfilter.1.gz
/usr/share/man/man1/hhmake.1.gz
/usr/share/man/man1/hhsearch.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 13 (Trixie) no navegador Construir uma imagem que inclui hhsuite

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
3.3.0+ds-8+b3	trixie / main	amd64	Debian 13 · main · amd64	54 MiB	457 MiB	pool/main/h/hhsuite/hhsuite_3.3.0+ds-8+b3_amd64.deb
3.3.0+ds-8+b3	trixie / main	arm64	Debian 13 · main · arm64	9.9 MiB	76 MiB	pool/main/h/hhsuite/hhsuite_3.3.0+ds-8+b3_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3.3.0+ds-8+b3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 8c4d7307ef53215b9c6eb6a312898b6e2b7dbec5f4aadca71115cb1ff42d6630

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '8c4d7307ef53215b9c6eb6a312898b6e2b7dbec5f4aadca71115cb1ff42d6630' 'hhsuite_3.3.0+ds-8+b3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

3.3.0+ds-8+b3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: d8ba64852d11f4325cfaafba12ea56eb4070c38f914ee6bde048783a5157e140

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'd8ba64852d11f4325cfaafba12ea56eb4070c38f914ee6bde048783a5157e140' 'hhsuite_3.3.0+ds-8+b3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified