Debian 13 (Trixie) native package

ncbi-entrez-direct

NCBI Entrez utilities on the command line

Packages / Debian 13 (Trixie) / science / ncbi-entrez-direct

[Source: ncbi-entrez-direct]

Package: ncbi-entrez-direct (24.0.20250523+dfsg-1+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.ncbi.nlm.nih.gov]

NCBI Entrez utilities on the command line

Other Packages Related to ncbi-entrez-direct:

dep: [curl]
command line tool for transferring data with URL syntax
dep: [wget]
retrieves files from the web
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries

rec: [python3] [any]
interactive high-level object-oriented language (default python3 version)

sug: [curl]
command line tool for transferring data with URL syntax
sug: [golang-any]
Go programming language -- gccgo on "non-Go" platforms
sug: [libxml-simple-perl]
Perl module for reading and writing XML
sug: [libxml2-utils]
GNOME XML library - utilities
sug: [unzip]
De-archiver for .zip files
sug: [perl] [any]
Larry Wall's Practical Extraction and Report Language

Download ncbi-entrez-direct

Architecture	Package Size	Installed Size	Files
amd64	8.2 MiB	31 MiB	[list of files]
arm64	7.0 MiB	30 MiB	[list of files]

Caminhos de arquivo do pacote (339)

Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.

/etc/ncbi/xfetch.ini
/etc/ncbi/xlink.ini
/usr/bin/accn-at-a-time
/usr/bin/amino-acid-composition
/usr/bin/archive-nihocc
/usr/bin/archive-nlmnlp
/usr/bin/archive-nmcds
/usr/bin/archive-pids
/usr/bin/archive-pmc
/usr/bin/archive-pubmed
/usr/bin/archive-taxonomy
/usr/bin/asn2ref
/usr/bin/between-two-genes
/usr/bin/blst2tkns
/usr/bin/bsmp2info
/usr/bin/cit2pmid
/usr/bin/combine-uid-lists
/usr/bin/csv2xml
/usr/bin/custom-index
/usr/bin/difference-uid-lists
/usr/bin/disambiguate-nucleotides
/usr/bin/download-flatfile
/usr/bin/download-ncbi-data
/usr/bin/download-ncbi-software
/usr/bin/download-pmc
/usr/bin/download-pubmed
/usr/bin/download-sequence
/usr/bin/ds2pme
/usr/bin/ecollect
/usr/bin/edict
/usr/bin/efetch
/usr/bin/efetch.ncbi
/usr/bin/efilter
/usr/bin/einfo
/usr/bin/einfo.ncbi
/usr/bin/elink
/usr/bin/epost
/usr/bin/esample
/usr/bin/esearch
/usr/bin/esummary
/usr/bin/exclude-uid-lists
/usr/bin/expand-current
/usr/bin/filter-columns
/usr/bin/filter-record
/usr/bin/filter-stop-words
/usr/bin/find-in-gene
/usr/bin/fsa2xml
/usr/bin/fuse-ranges
/usr/bin/fuse-segments
/usr/bin/gbf2facds
/usr/bin/gbf2fsa
/usr/bin/gbf2info
/usr/bin/gbf2ref
/usr/bin/gbf2tbl
/usr/bin/gbf2xml
/usr/bin/gene2range
/usr/bin/gff2xml
/usr/bin/gff-sort
/usr/bin/gm2segs
/usr/bin/hgvs2spdi
/usr/bin/ini2xml
/usr/bin/intersect-uid-lists
/usr/bin/join-into-groups-of
/usr/bin/json2xml
/usr/bin/jsonl2xml
/usr/bin/just-top-hits
/usr/bin/nquire
/usr/bin/pair-at-a-time
/usr/bin/pma2apa
/usr/bin/pma2pme
/usr/bin/pmc2bioc
/usr/bin/pmc2info
/usr/bin/pm-clean
/usr/bin/pm-collect
/usr/bin/pm-prepare
/usr/bin/pm-refresh
/usr/bin/pm-setup
/usr/bin/print-columns
/usr/bin/print-missing-subranges
/usr/bin/quote-grouped-elements
/usr/bin/rchive
/usr/bin/ref2pmid
/usr/bin/refseq-nm-cds
/usr/bin/reorder-columns
/usr/bin/run-ncbi-converter
/usr/bin/scn2xml
/usr/bin/skip-if-file-exists
/usr/bin/snp2hgvs
/usr/bin/snp2tbl
/usr/bin/sort-by-length
/usr/bin/sort-table
/usr/bin/sort-uniq-count
/usr/bin/sort-uniq-count-rank
/usr/bin/spdi2tbl
/usr/bin/split-at-intron
/usr/bin/systematic-mutations
/usr/bin/tbl2prod
/usr/bin/tbl2xml
/usr/bin/transmute
/usr/bin/uniq-table
/usr/bin/word-at-a-time
/usr/bin/xfetch
/usr/bin/xfilter
/usr/bin/xinfo
/usr/bin/xlink
/usr/bin/xml2fsa
/usr/bin/xml2tbl
/usr/bin/xsearch
/usr/bin/xtract
/usr/bin/xy-plot
/usr/bin/yaml2xml
/usr/lib/ncbi-entrez-direct/bin/asn2xml
/usr/lib/ncbi-entrez-direct/data/unicode-ascii.txt
/usr/lib/ncbi-entrez-direct/data/unicode-extra.txt
/usr/lib/ncbi-entrez-direct/ecommon.sh
/usr/lib/ncbi-entrez-direct/eutils/align.go
/usr/lib/ncbi-entrez-direct/eutils/asn.go
/usr/lib/ncbi-entrez-direct/eutils/build.sh
/usr/lib/ncbi-entrez-direct/eutils/cache.go
/usr/lib/ncbi-entrez-direct/eutils/chan.go
/usr/lib/ncbi-entrez-direct/eutils/citref.go
/usr/lib/ncbi-entrez-direct/eutils/clean.go
/usr/lib/ncbi-entrez-direct/eutils/eutils_test.go
/usr/lib/ncbi-entrez-direct/eutils/fasta.go
/usr/lib/ncbi-entrez-direct/eutils/format.go
/usr/lib/ncbi-entrez-direct/eutils/gbff.go
/usr/lib/ncbi-entrez-direct/eutils/gcode.go
/usr/lib/ncbi-entrez-direct/eutils/gdata.go
/usr/lib/ncbi-entrez-direct/eutils/go.mod
/usr/lib/ncbi-entrez-direct/eutils/go.sum
/usr/lib/ncbi-entrez-direct/eutils/hgvs.go
/usr/lib/ncbi-entrez-direct/eutils/index.go
/usr/lib/ncbi-entrez-direct/eutils/ini.go
/usr/lib/ncbi-entrez-direct/eutils/insd.go
/usr/lib/ncbi-entrez-direct/eutils/json.go
/usr/lib/ncbi-entrez-direct/eutils/merge.go
/usr/lib/ncbi-entrez-direct/eutils/misc.go
/usr/lib/ncbi-entrez-direct/eutils/molwt.go
/usr/lib/ncbi-entrez-direct/eutils/normal.go
/usr/lib/ncbi-entrez-direct/eutils/phrase.go
/usr/lib/ncbi-entrez-direct/eutils/poster.go
/usr/lib/ncbi-entrez-direct/eutils/search.go
/usr/lib/ncbi-entrez-direct/eutils/spdi.go
/usr/lib/ncbi-entrez-direct/eutils/table.go
/usr/lib/ncbi-entrez-direct/eutils/text.go
/usr/lib/ncbi-entrez-direct/eutils/toml.go
/usr/lib/ncbi-entrez-direct/eutils/transmute_test.go
/usr/lib/ncbi-entrez-direct/eutils/trie.go
/usr/lib/ncbi-entrez-direct/eutils/utils.go
/usr/lib/ncbi-entrez-direct/eutils/valid.go
/usr/lib/ncbi-entrez-direct/eutils/xml.go
/usr/lib/ncbi-entrez-direct/eutils/xparse.go
/usr/lib/ncbi-entrez-direct/eutils/xplore.go
/usr/lib/ncbi-entrez-direct/eutils/xtract_test.go
/usr/lib/ncbi-entrez-direct/eutils/yaml.go
/usr/lib/ncbi-entrez-direct/extern/build.sh
/usr/lib/ncbi-entrez-direct/extern/prep-finish.go
/usr/lib/ncbi-entrez-direct/extern/prep-geneinfo.go
/usr/lib/ncbi-entrez-direct/extern/prep-generif.go
/usr/lib/ncbi-entrez-direct/extern/prep-nihocc.go
/usr/lib/ncbi-entrez-direct/extern/prep-nlmnlp.go
/usr/lib/ncbi-entrez-direct/extern/prep-taxoninfo.go
/usr/lib/ncbi-entrez-direct/help/efetch-help.txt
/usr/lib/ncbi-entrez-direct/help/efilter-help.txt
/usr/lib/ncbi-entrez-direct/help/einfo-errors.txt
/usr/lib/ncbi-entrez-direct/help/einfo-help.txt
/usr/lib/ncbi-entrez-direct/help/elink-help.txt
/usr/lib/ncbi-entrez-direct/help/epost-help.txt
/usr/lib/ncbi-entrez-direct/help/esearch-help.txt
/usr/lib/ncbi-entrez-direct/help/esummary-help.txt
/usr/lib/ncbi-entrez-direct/help/nquire-examples.txt
/usr/lib/ncbi-entrez-direct/help/nquire-help.txt
/usr/lib/ncbi-entrez-direct/help/phrase-search-extras.txt
/usr/lib/ncbi-entrez-direct/help/phrase-search-help.txt
/usr/lib/ncbi-entrez-direct/help/rchive-extras.txt
/usr/lib/ncbi-entrez-direct/help/rchive-help.txt
/usr/lib/ncbi-entrez-direct/help/rchive-internal.txt
/usr/lib/ncbi-entrez-direct/help/transmute-extras.txt
/usr/lib/ncbi-entrez-direct/help/transmute-help.txt
/usr/lib/ncbi-entrez-direct/help/tst-efetch.txt
/usr/lib/ncbi-entrez-direct/help/tst-elink.txt
/usr/lib/ncbi-entrez-direct/help/tst-esearch.txt
/usr/lib/ncbi-entrez-direct/help/tst-esummary.txt
/usr/lib/ncbi-entrez-direct/help/xtract-examples.txt
/usr/lib/ncbi-entrez-direct/help/xtract-help.txt
/usr/lib/ncbi-entrez-direct/help/xtract-internal.txt
/usr/lib/ncbi-entrez-direct/help/xtract-keys.txt
/usr/lib/ncbi-entrez-direct/help/xtract-unix.txt
/usr/lib/ncbi-entrez-direct/nhance.sh
/usr/lib/ncbi-entrez-direct/rchive
/usr/lib/ncbi-entrez-direct/transmute
/usr/lib/ncbi-entrez-direct/xml2json
/usr/lib/ncbi-entrez-direct/xtract
/usr/lib/python3/dist-packages/edirect.py
/usr/share/doc/ncbi-entrez-direct/changelog.Debian.amd64.gz
/usr/share/doc/ncbi-entrez-direct/changelog.Debian.arm64.gz
/usr/share/doc/ncbi-entrez-direct/changelog.Debian.gz
/usr/share/doc/ncbi-entrez-direct/copyright
/usr/share/doc/ncbi-entrez-direct/examples/blst2gm
/usr/share/doc/ncbi-entrez-direct/examples/gm2ranges
/usr/share/doc/ncbi-entrez-direct/examples/idx-affil
/usr/share/doc/ncbi-entrez-direct/examples/idx-auid
/usr/share/doc/ncbi-entrez-direct/examples/idx-authors
/usr/share/doc/ncbi-entrez-direct/examples/idx-doi
/usr/share/doc/ncbi-entrez-direct/examples/idx-errors
/usr/share/doc/ncbi-entrez-direct/examples/idx-grant
/usr/share/doc/ncbi-entrez-direct/examples/idx-journals
/usr/share/doc/ncbi-entrez-direct/examples/idx-metadata
/usr/share/doc/ncbi-entrez-direct/examples/idx-pairs
/usr/share/doc/ncbi-entrez-direct/examples/idx-stemmed
/usr/share/doc/ncbi-entrez-direct/examples/idx-words
/usr/share/doc/ncbi-entrez-direct/examples/list1
/usr/share/doc/ncbi-entrez-direct/examples/list2
/usr/share/doc/ncbi-entrez-direct/examples/list3
/usr/share/doc/ncbi-entrez-direct/examples/sample.gbf
/usr/share/doc/ncbi-entrez-direct/examples/sample.json
/usr/share/doc/ncbi-entrez-direct/examples/sample_query.xml
/usr/share/doc/ncbi-entrez-direct/examples/sample.xml
/usr/share/doc/ncbi-entrez-direct/examples/stopwords
/usr/share/doc/ncbi-entrez-direct/examples/test-pubmed-index
/usr/share/doc/ncbi-entrez-direct/NEWS.Debian.gz
/usr/share/doc/ncbi-entrez-direct/README.Debian
/usr/share/doc/ncbi-entrez-direct/README.gz
/usr/share/doc/ncbi-entrez-direct/README.test
/usr/share/doc/ncbi-entrez-direct/run-unit-test
/usr/share/man/man1/accn-at-a-time.1.gz
/usr/share/man/man1/align-columns.1.gz
/usr/share/man/man1/amino-acid-composition.1.gz
/usr/share/man/man1/archive-nihocc.1.gz
/usr/share/man/man1/archive-nlmnlp.1.gz
/usr/share/man/man1/archive-nmcds.1.gz
/usr/share/man/man1/archive-pids.1.gz
/usr/share/man/man1/archive-pmc.1.gz
/usr/share/man/man1/archive-pubmed.1.gz
/usr/share/man/man1/archive-taxonomy.1.gz
/usr/share/man/man1/args2slice.1.gz
/usr/share/man/man1/asn2ref.1.gz
/usr/share/man/man1/between-two-genes.1.gz
/usr/share/man/man1/blst2tkns.1.gz
/usr/share/man/man1/bsmp2info.1.gz
/usr/share/man/man1/cit2pmid.1.gz
/usr/share/man/man1/combine-uid-lists.1.gz
/usr/share/man/man1/csv2xml.1.gz
/usr/share/man/man1/custom-index.1.gz
/usr/share/man/man1/difference-uid-lists.1.gz
/usr/share/man/man1/disambiguate-nucleotides.1.gz
/usr/share/man/man1/download-flatfile.1.gz
/usr/share/man/man1/download-ncbi-data.1.gz
/usr/share/man/man1/download-ncbi-software.1.gz
/usr/share/man/man1/download-pmc.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 13 (Trixie) no navegador Construir uma imagem que inclui ncbi-entrez-direct

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
24.0.20250523+dfsg-1+b1	trixie / main	amd64	Debian 13 · main · amd64	8.2 MiB	31 MiB	pool/main/n/ncbi-entrez-direct/ncbi-entrez-direct_24.0.20250523+dfsg-1+b1_amd64.deb
24.0.20250523+dfsg-1+b1	trixie / main	arm64	Debian 13 · main · arm64	7.0 MiB	30 MiB	pool/main/n/ncbi-entrez-direct/ncbi-entrez-direct_24.0.20250523+dfsg-1+b1_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

24.0.20250523+dfsg-1+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 2ac7e0a824ba77a028602742145338cbc1bcc6e2ec644d28f385b3e9738015f3

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '2ac7e0a824ba77a028602742145338cbc1bcc6e2ec644d28f385b3e9738015f3' 'ncbi-entrez-direct_24.0.20250523+dfsg-1+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

24.0.20250523+dfsg-1+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e080e58d96f0d9eca8789e6e0a58945dcb0c3abb660bb56601777a107ee74250

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'e080e58d96f0d9eca8789e6e0a58945dcb0c3abb660bb56601777a107ee74250' 'ncbi-entrez-direct_24.0.20250523+dfsg-1+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified