Debian 13 (Trixie) native package

physamp

sample sequence alignment corresponding to phylogeny

Packages / Debian 13 (Trixie) / science / physamp

[Source: physamp]

Package: physamp (1.1.0-5+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [jydu.github.io]

sample sequence alignment corresponding to phylogeny

Other Packages Related to physamp:

dep: [libbpp-core4t64] (>= 2.4.1)
Bio++ Core library
dep: [libbpp-phyl12t64] (>= 2.4.1)
Bio++ Phylogenetic library
dep: [libbpp-seq12t64] (>= 2.4.1)
Bio++ Sequence library
dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3

Download physamp

Architecture	Package Size	Installed Size	Files
amd64	182 KiB	1.7 MiB	[list of files]
arm64	177 KiB	1.8 MiB	[list of files]

Caminhos de arquivo do pacote (20)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/bppalnoptim
/usr/bin/bppphysamp
/usr/share/doc/physamp/changelog.Debian.arm64.gz
/usr/share/doc/physamp/changelog.Debian.gz
/usr/share/doc/physamp/changelog.gz
/usr/share/doc/physamp/copyright
/usr/share/doc/physamp/examples/LSU/LSU.dnd
/usr/share/doc/physamp/examples/LSU/LSU.phy
/usr/share/doc/physamp/examples/LSU/PhySamp.bpp
/usr/share/doc/physamp/examples/PF01049/AlnOptimAuto.bpp
/usr/share/doc/physamp/examples/PF01049/AlnOptimFasttree.bpp
/usr/share/doc/physamp/examples/PF01049/AlnOptimFasttreeStop.bpp
/usr/share/doc/physamp/examples/PF01049/diagnostic.R
/usr/share/doc/physamp/examples/PF01049/PF01049_fasttree.dnd
/usr/share/doc/physamp/examples/PF01049/PF01049_full.txt
/usr/share/doc/physamp/examples/PF01049/README
/usr/share/doc/physamp/examples/PF01049/runFasttree.sh
/usr/share/info/physamp.info.gz
/usr/share/man/man1/bppalnoptim.1.gz
/usr/share/man/man1/bppphysamp.1.gz

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 13 (Trixie) no navegador Construir uma imagem que inclui physamp

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.1.0-5+b1	trixie / main	arm64	Debian 13 · main · arm64	177 KiB	1.8 MiB	pool/main/p/physamp/physamp_1.1.0-5+b1_arm64.deb
1.1.0-5	trixie / main	amd64	Debian 13 · main · amd64	182 KiB	1.7 MiB	pool/main/p/physamp/physamp_1.1.0-5_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.1.0-5+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 10d99509ff6867f04a60992677c30aaf33c652de4b788fb477e5e961af432756

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '10d99509ff6867f04a60992677c30aaf33c652de4b788fb477e5e961af432756' 'physamp_1.1.0-5+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

1.1.0-5 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 4ac3fae9832b465fb8d481bc6923d0325941d8f39ab63fb7d6888cfa7273ce67

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '4ac3fae9832b465fb8d481bc6923d0325941d8f39ab63fb7d6888cfa7273ce67' 'physamp_1.1.0-5_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified