Debian 13 (Trixie) native package

python3-bx

library to manage genomic data and its alignment

Packages / Debian 13 (Trixie) / python / python3-bx

[Source: python-bx]

Package: python3-bx

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

library to manage genomic data and its alignment

Nenhum registro publicado corresponde a este filtro de suite e arquitetura.

Caminhos de arquivo do pacote (261)

Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.

/usr/bin/aggregate_scores_in_intervals.py
/usr/bin/align_print_template.py
/usr/bin/axt_extract_ranges.py
/usr/bin/axt_to_fasta.py
/usr/bin/axt_to_lav.py
/usr/bin/axt_to_maf.py
/usr/bin/bed_bigwig_profile.py
/usr/bin/bed_build_windows.py
/usr/bin/bed_complement.py
/usr/bin/bed_count_by_interval.py
/usr/bin/bed_count_overlapping.py
/usr/bin/bed_coverage_by_interval.py
/usr/bin/bed_coverage.py
/usr/bin/bed_diff_basewise_summary.py
/usr/bin/bed_extend_to.py
/usr/bin/bed_intersect_basewise.py
/usr/bin/bed_intersect.py
/usr/bin/bed_merge_overlapping.py
/usr/bin/bed_rand_intersect.py
/usr/bin/bed_subtract_basewise.py
/usr/bin/bnMapper.py
/usr/bin/div_snp_table_chr.py
/usr/bin/find_in_sorted_file.py
/usr/bin/gene_fourfold_sites.py
/usr/bin/get_scores_in_intervals.py
/usr/bin/interval_count_intersections.py
/usr/bin/interval_join.py
/usr/bin/int_seqs_to_char_strings.py
/usr/bin/lav_to_axt.py
/usr/bin/lav_to_maf.py
/usr/bin/line_select.py
/usr/bin/lzop_build_offset_table.py
/usr/bin/maf_build_index.py
/usr/bin/maf_chop.py
/usr/bin/maf_chunk.py
/usr/bin/maf_col_counts_all.py
/usr/bin/maf_col_counts.py
/usr/bin/maf_count.py
/usr/bin/maf_covered_ranges.py
/usr/bin/maf_covered_regions.py
/usr/bin/maf_div_sites.py
/usr/bin/maf_drop_overlapping.py
/usr/bin/maf_extract_chrom_ranges.py
/usr/bin/maf_extract_ranges_indexed.py
/usr/bin/maf_extract_ranges.py
/usr/bin/maf_filter_max_wc.py
/usr/bin/maf_filter.py
/usr/bin/maf_gap_frequency.py
/usr/bin/maf_gc_content.py
/usr/bin/maf_interval_alignibility.py
/usr/bin/maf_limit_to_species.py
/usr/bin/maf_mapping_word_frequency.py
/usr/bin/maf_mask_cpg.py
/usr/bin/maf_mean_length_ungapped_piece.py
/usr/bin/maf_percent_columns_matching.py
/usr/bin/maf_percent_identity.py
/usr/bin/maf_print_chroms.py
/usr/bin/maf_print_scores.py
/usr/bin/maf_randomize.py
/usr/bin/maf_region_coverage_by_src.py
/usr/bin/maf_select.py
/usr/bin/maf_shuffle_columns.py
/usr/bin/maf_species_in_all_files.py
/usr/bin/maf_split_by_src.py
/usr/bin/maf_thread_for_species.py
/usr/bin/maf_tile_2bit.py
/usr/bin/maf_tile_2.py
/usr/bin/maf_tile.py
/usr/bin/maf_to_axt.py
/usr/bin/maf_to_concat_fasta.py
/usr/bin/maf_to_fasta.py
/usr/bin/maf_to_int_seqs.py
/usr/bin/maf_translate_chars.py
/usr/bin/maf_truncate.py
/usr/bin/maf_word_frequency.py
/usr/bin/mask_quality.py
/usr/bin/mMK_bitset.py
/usr/bin/nib_chrom_intervals_to_fasta.py
/usr/bin/nib_intervals_to_fasta.py
/usr/bin/nib_length.py
/usr/bin/one_field_per_line.py
/usr/bin/out_to_chain.py
/usr/bin/prefix_lines.py
/usr/bin/pretty_table.py
/usr/bin/qv_to_bqv.py
/usr/bin/random_lines.py
/usr/bin/table_add_column.py
/usr/bin/table_filter.py
/usr/bin/tfloc_summary.py
/usr/bin/ucsc_gene_table_to_intervals.py
/usr/bin/wiggle_to_array_tree.py
/usr/bin/wiggle_to_binned_array.py
/usr/bin/wiggle_to_chr_binned_array.py
/usr/bin/wiggle_to_simple.py
/usr/lib/python3/dist-packages/bx/align/axt.py
/usr/lib/python3/dist-packages/bx/align/_core.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/align/_core.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/align/core.py
/usr/lib/python3/dist-packages/bx/align/_epo.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/align/_epo.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/align/epo.py
/usr/lib/python3/dist-packages/bx/align/epo_tests.py
/usr/lib/python3/dist-packages/bx/align/__init__.py
/usr/lib/python3/dist-packages/bx/align/lav.py
/usr/lib/python3/dist-packages/bx/align/lav_tests.py
/usr/lib/python3/dist-packages/bx/align/maf.py
/usr/lib/python3/dist-packages/bx/align/maf_tests.py
/usr/lib/python3/dist-packages/bx/align/score.py
/usr/lib/python3/dist-packages/bx/align/score_tests.py
/usr/lib/python3/dist-packages/bx/align/sitemask/core.py
/usr/lib/python3/dist-packages/bx/align/sitemask/_cpg.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/align/sitemask/_cpg.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/align/sitemask/cpg.py
/usr/lib/python3/dist-packages/bx/align/sitemask/__init__.py
/usr/lib/python3/dist-packages/bx/align/sitemask/quality.py
/usr/lib/python3/dist-packages/bx/align/sitemask/sitemask_tests.py
/usr/lib/python3/dist-packages/bx/align/tools/chop.py
/usr/lib/python3/dist-packages/bx/align/tools/fuse.py
/usr/lib/python3/dist-packages/bx/align/tools/__init__.py
/usr/lib/python3/dist-packages/bx/align/tools/thread.py
/usr/lib/python3/dist-packages/bx/align/tools/tile.py
/usr/lib/python3/dist-packages/bx/arrays/array_tree.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/arrays/array_tree.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/arrays/array_tree_tests.py
/usr/lib/python3/dist-packages/bx/arrays/bed.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/arrays/bed.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/arrays/__init__.py
/usr/lib/python3/dist-packages/bx/arrays/wiggle.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/arrays/wiggle.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/bbi_file.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/bbi_file.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/bigbed_file.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/bigbed_file.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/bigwig_file.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/bigwig_file.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/bigwig_tests.py
/usr/lib/python3/dist-packages/bx/bbi/bpt_file.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/bpt_file.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/cirtree_file.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/cirtree_file.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bbi/__init__.py
/usr/lib/python3/dist-packages/bx/binned_array.py
/usr/lib/python3/dist-packages/bx/binned_array_tests.py
/usr/lib/python3/dist-packages/bx/bitset_builders.py
/usr/lib/python3/dist-packages/bx/bitset.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bitset.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/bitset_tests.py
/usr/lib/python3/dist-packages/bx/bitset_utils.py
/usr/lib/python3/dist-packages/bx/cookbook/attribute.py
/usr/lib/python3/dist-packages/bx/cookbook/doc_optparse.py
/usr/lib/python3/dist-packages/bx/cookbook/__init__.py
/usr/lib/python3/dist-packages/bx_extras/fpconst.py
/usr/lib/python3/dist-packages/bx_extras/fpconst_tests.py
/usr/lib/python3/dist-packages/bx_extras/__init__.py
/usr/lib/python3/dist-packages/bx_extras/lrucache.py
/usr/lib/python3/dist-packages/bx_extras/pstat.py
/usr/lib/python3/dist-packages/bx_extras/stats.py
/usr/lib/python3/dist-packages/bx/filter.py
/usr/lib/python3/dist-packages/bx/gene_reader.py
/usr/lib/python3/dist-packages/bx/__init__.py
/usr/lib/python3/dist-packages/bx/interval_index_file.py
/usr/lib/python3/dist-packages/bx/interval_index_file_tests.py
/usr/lib/python3/dist-packages/bx/intervals/cluster.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/intervals/cluster.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/intervals/cluster_tests.py
/usr/lib/python3/dist-packages/bx/intervals/__init__.py
/usr/lib/python3/dist-packages/bx/intervals/intersection.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/intervals/intersection.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/intervals/intersection_tests.py
/usr/lib/python3/dist-packages/bx/intervals/io.py
/usr/lib/python3/dist-packages/bx/intervals/operations/base_coverage.py
/usr/lib/python3/dist-packages/bx/intervals/operations/complement.py
/usr/lib/python3/dist-packages/bx/intervals/operations/concat.py
/usr/lib/python3/dist-packages/bx/intervals/operations/coverage.py
/usr/lib/python3/dist-packages/bx/intervals/operations/find_clusters.py
/usr/lib/python3/dist-packages/bx/intervals/operations/__init__.py
/usr/lib/python3/dist-packages/bx/intervals/operations/intersect.py
/usr/lib/python3/dist-packages/bx/intervals/operations/join.py
/usr/lib/python3/dist-packages/bx/intervals/operations/merge.py
/usr/lib/python3/dist-packages/bx/intervals/operations/quicksect.py
/usr/lib/python3/dist-packages/bx/intervals/operations/subtract.py
/usr/lib/python3/dist-packages/bx/intervals/random_intervals.py
/usr/lib/python3/dist-packages/bx/intseq/__init__.py
/usr/lib/python3/dist-packages/bx/intseq/ngramcount.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/intseq/ngramcount.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/misc/bgzf.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/misc/bgzf.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/misc/bgzf_tests.py
/usr/lib/python3/dist-packages/bx/misc/binary_file.py
/usr/lib/python3/dist-packages/bx/misc/cdb.py
/usr/lib/python3/dist-packages/bx/misc/cdb_tests.py
/usr/lib/python3/dist-packages/bx/misc/filecache.py
/usr/lib/python3/dist-packages/bx/misc/filecache_tests.py
/usr/lib/python3/dist-packages/bx/misc/__init__.py
/usr/lib/python3/dist-packages/bx/misc/readlengths.py
/usr/lib/python3/dist-packages/bx/misc/_seekbzip2.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/misc/_seekbzip2.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/misc/seekbzip2.py
/usr/lib/python3/dist-packages/bx/misc/seekbzip2_tests.py
/usr/lib/python3/dist-packages/bx/misc/seeklzop.py
/usr/lib/python3/dist-packages/bx/misc/seeklzop_tests.py
/usr/lib/python3/dist-packages/bx/motif/__init__.py
/usr/lib/python3/dist-packages/bx/motif/io/__init__.py
/usr/lib/python3/dist-packages/bx/motif/io/transfac.py
/usr/lib/python3/dist-packages/bx/motif/io/transfac_tests.py
/usr/lib/python3/dist-packages/bx/motif/logo/__init__.py
/usr/lib/python3/dist-packages/bx/motif/logo/template.ps
/usr/lib/python3/dist-packages/bx/motif/_pwm.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/motif/_pwm.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/motif/pwm.py
/usr/lib/python3/dist-packages/bx/motif/pwm_tests.py
/usr/lib/python3/dist-packages/bx/phylo/__init__.py
/usr/lib/python3/dist-packages/bx/phylo/newick.py
/usr/lib/python3/dist-packages/bx/phylo/newick_tests.py
/usr/lib/python3/dist-packages/bx/phylo/phast.py
/usr/lib/python3/dist-packages/bx/phylo/phast_tests.py
/usr/lib/python3/dist-packages/bx/pwm/bed_score_aligned_pwm.py
/usr/lib/python3/dist-packages/bx/pwm/bed_score_aligned_string.py
/usr/lib/python3/dist-packages/bx/pwm/__init__.py
/usr/lib/python3/dist-packages/bx/pwm/maf_select_motifs.py
/usr/lib/python3/dist-packages/bx/pwm/_position_weight_matrix.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/pwm/_position_weight_matrix.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/pwm/position_weight_matrix.py
/usr/lib/python3/dist-packages/bx/pwm/pwm_score_maf.py
/usr/lib/python3/dist-packages/bx/pwm/pwm_score_motifs.py
/usr/lib/python3/dist-packages/bx/pwm/pwm_score_positions.py
/usr/lib/python3/dist-packages/bx/pwm/pwm_tests.py
/usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/INSTALLER
/usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/METADATA
/usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/top_level.txt
/usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/WHEEL
/usr/lib/python3/dist-packages/bx/seq/core.py
/usr/lib/python3/dist-packages/bx/seq/fasta.py
/usr/lib/python3/dist-packages/bx/seq/fasta_tests.py
/usr/lib/python3/dist-packages/bx/seq/__init__.py
/usr/lib/python3/dist-packages/bx/_seqmapping.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/_seqmapping.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/seqmapping.py
/usr/lib/python3/dist-packages/bx/seqmapping_tests.py
/usr/lib/python3/dist-packages/bx/seq/_nib.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/seq/_nib.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/seq/nib.py
/usr/lib/python3/dist-packages/bx/seq/nib_tests.py
/usr/lib/python3/dist-packages/bx/seq/qdna.py
/usr/lib/python3/dist-packages/bx/seq/qdna_tests.py
/usr/lib/python3/dist-packages/bx/seq/seq.py
/usr/lib/python3/dist-packages/bx/seq/seq_tests.py
/usr/lib/python3/dist-packages/bx/seq/_twobit.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/seq/_twobit.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/bx/seq/twobit.py

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Completude do registro

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Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified