Packages / Debian 13 (Trixie) / contrib/science / python3-seqcluster
Package: python3-seqcluster (1.2.9+ds-5)
Maintainers:
External Resources:
Homepage: [github.com]
Similar packages:
- [python-seqcluster-doc]
analysis of small RNA in NGS data (documentation)
- [seqcluster]
analysis of small RNA in NGS data
analysis of small RNA in NGS data
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ultrafast universal RNA-seq aligner
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ultrafast memory-efficient short read aligner
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Package not available
sug: [seqcluster]
analysis of small RNA in NGS data
Download python3-seqcluster
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 1.6 MiB | 106 MiB | [list of files] |
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