Debian 13 (Trixie) native package

python3-skbio

Python3 data structures, algorithms, educational resources for bioinformatic

Packages / Debian 13 (Trixie) / python / python3-skbio

[Source: python-skbio]

Package: python3-skbio (0.6.2-4+b2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

[python-skbio-doc]
Data structures, algorithms, educational resources for bioinformatics (docs)

Python3 data structures, algorithms, educational resources for bioinformatic

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dep: [python3] (<< 3.14)
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dep: [python3] (>= 3.13~)
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dep: [python3-biom-format]
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dep: [python3-decorator]
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dep: [python3-h5py] (>= 3.6.0)
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sug: [python-skbio-doc] (= 0.6.2-4+b2)
Data structures, algorithms, educational resources for bioinformatics (docs)

Download python3-skbio

Architecture	Package Size	Installed Size	Files
amd64	1.3 MiB	6.4 MiB	[list of files]

Caminhos de arquivo do pacote (750)

Showing the first 250 sorted package-associated paths. Use file search to locate a specific path.

/usr/lib/python3/dist-packages/scikit_bio-0.6.2.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/scikit_bio-0.6.2.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/scikit_bio-0.6.2.egg-info/requires.txt
/usr/lib/python3/dist-packages/scikit_bio-0.6.2.egg-info/top_level.txt
/usr/lib/python3/dist-packages/skbio/alignment/_indexing.py
/usr/lib/python3/dist-packages/skbio/alignment/__init__.py
/usr/lib/python3/dist-packages/skbio/alignment/_lib/__init__.py
/usr/lib/python3/dist-packages/skbio/alignment/_pairwise.py
/usr/lib/python3/dist-packages/skbio/alignment/_path.py
/usr/lib/python3/dist-packages/skbio/alignment/_repr.py
/usr/lib/python3/dist-packages/skbio/alignment/_ssw_wrapper.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/skbio/alignment/_ssw_wrapper.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/skbio/alignment/_tabular_msa.py
/usr/lib/python3/dist-packages/skbio/alignment/tests/__init__.py
/usr/lib/python3/dist-packages/skbio/alignment/tests/test_pairwise.py
/usr/lib/python3/dist-packages/skbio/alignment/tests/test_path.py
/usr/lib/python3/dist-packages/skbio/alignment/tests/test_ssw.py
/usr/lib/python3/dist-packages/skbio/alignment/tests/test_tabular_msa.py
/usr/lib/python3/dist-packages/skbio/_base.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_ace.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_base.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_chao1.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_gini.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_lladser.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/_pd.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/README.md
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_ace.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_base.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_chao1.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_gini.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_lladser.py
/usr/lib/python3/dist-packages/skbio/diversity/alpha/tests/test_pd.py
/usr/lib/python3/dist-packages/skbio/diversity/beta/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/README.md
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/beta/tests/test_unifrac.py
/usr/lib/python3/dist-packages/skbio/diversity/beta/_unifrac.py
/usr/lib/python3/dist-packages/skbio/diversity/_block.py
/usr/lib/python3/dist-packages/skbio/diversity/_driver.py
/usr/lib/python3/dist-packages/skbio/diversity/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/_phylogenetic.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/skbio/diversity/_phylogenetic.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/skbio/diversity/tests/__init__.py
/usr/lib/python3/dist-packages/skbio/diversity/tests/test_block.py
/usr/lib/python3/dist-packages/skbio/diversity/tests/test_driver.py
/usr/lib/python3/dist-packages/skbio/diversity/tests/test_util.py
/usr/lib/python3/dist-packages/skbio/diversity/_util.py
/usr/lib/python3/dist-packages/skbio/embedding/_embedding.py
/usr/lib/python3/dist-packages/skbio/embedding/__init__.py
/usr/lib/python3/dist-packages/skbio/embedding/_protein.py
/usr/lib/python3/dist-packages/skbio/embedding/tests/data/embed1.txt.npy
/usr/lib/python3/dist-packages/skbio/embedding/tests/__init__.py
/usr/lib/python3/dist-packages/skbio/embedding/tests/test_embedding.py
/usr/lib/python3/dist-packages/skbio/embedding/tests/test_protein.py
/usr/lib/python3/dist-packages/skbio/__init__.py
/usr/lib/python3/dist-packages/skbio/io/_exception.py
/usr/lib/python3/dist-packages/skbio/io/_fileobject.py
/usr/lib/python3/dist-packages/skbio/io/format/_base.py
/usr/lib/python3/dist-packages/skbio/io/format/binary_dm.py
/usr/lib/python3/dist-packages/skbio/io/format/biom.py
/usr/lib/python3/dist-packages/skbio/io/format/blast6.py
/usr/lib/python3/dist-packages/skbio/io/format/blast7.py
/usr/lib/python3/dist-packages/skbio/io/format/_blast.py
/usr/lib/python3/dist-packages/skbio/io/format/clustal.py
/usr/lib/python3/dist-packages/skbio/io/format/embed.py
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/usr/lib/python3/dist-packages/skbio/io/format/emptyfile.py
/usr/lib/python3/dist-packages/skbio/io/format/fasta.py
/usr/lib/python3/dist-packages/skbio/io/format/fastq.py
/usr/lib/python3/dist-packages/skbio/io/format/genbank.py
/usr/lib/python3/dist-packages/skbio/io/format/gff3.py
/usr/lib/python3/dist-packages/skbio/io/format/__init__.py
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/usr/lib/python3/dist-packages/skbio/io/format/ordination.py
/usr/lib/python3/dist-packages/skbio/io/format/phylip.py
/usr/lib/python3/dist-packages/skbio/io/format/qseq.py
/usr/lib/python3/dist-packages/skbio/io/format/sample_metadata.py
/usr/lib/python3/dist-packages/skbio/io/format/_sequence_feature_vocabulary.py
/usr/lib/python3/dist-packages/skbio/io/format/stockholm.py
/usr/lib/python3/dist-packages/skbio/io/format/taxdump.py
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast6_custom_minimal
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast6_default_multi_line
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast6_invalid_column_types
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast6_invalid_number_of_columns
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast6_invalid_type_in_column
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_custom_minimal
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_custom_mixed_nans
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_custom_multi_line
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_custom_single_line
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_default_multi_line
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_default_single_line
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_differing_fields
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_for_sniffer
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_for_sniffer_2
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_gibberish
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_no_data
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/blast7_invalid_too_many_columns
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embed1.txt.npy
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_feature_level_record
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/embl_uniprot_record
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_diff_ids.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_double_qual.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_double_seq.fastq
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/error_qual_vtab.fastq
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/usr/lib/python3/dist-packages/skbio/io/format/tests/data/genbank_missing_locus_name
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/genbank_multi_records
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/genbank_single_record
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/genbank_single_record_lower
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/genbank_single_record_upper
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/genbank_w_beginning_whitespace
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/gff3_bad_missing_directive
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/gff3_bad_wrong_columns
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/gff3_dna
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/gff3_multi_record
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/gff3_single_record
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_and_blast7_default
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_invalid_differing_fields
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_invalid_too_many_columns
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_mixed_nans
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_multi_line
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/legacy9_single_line
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/longreads_as_illumina.fastq
/usr/lib/python3/dist-packages/skbio/io/format/tests/data/longreads_as_sanger.fastq

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 13 (Trixie) no navegador Construir uma imagem que inclui python3-skbio

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
0.6.2-4+b2	trixie / main	amd64	Debian 13 · main · amd64	1.3 MiB	6.4 MiB	pool/main/p/python-skbio/python3-skbio_0.6.2-4+b2_amd64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.6.2-4+b2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 22e9b4280ff0ee4627a91ec848c058bd88e33791cf20b142d924f8ac7cdff10c

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '22e9b4280ff0ee4627a91ec848c058bd88e33791cf20b142d924f8ac7cdff10c' 'python3-skbio_0.6.2-4+b2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified