Debian 13 (Trixie) native package

ragout

Reference-Assisted Genome Ordering UTility

Packages / Debian 13 (Trixie) / science / ragout

[Source: ragout]

Package: ragout (2.3-5+b2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

[ragout-examples]
Reference-Assisted Genome Ordering UTility (example data)

Reference-Assisted Genome Ordering UTility

Other Packages Related to ragout:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [python3-networkx]
tool to create, manipulate and study complex networks (Python3)
dep: [python3-six]
Python 2 and 3 compatibility library

rec: [sibelia]
comparative genomics tool

Download ragout

Architecture	Package Size	Installed Size	Files
amd64	2.0 MiB	9.4 MiB	[list of files]
arm64	2.0 MiB	9.4 MiB	[list of files]

Caminhos de arquivo do pacote (61)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/ragout
/usr/bin/ragout-maf2synteny
/usr/bin/ragout-overlap
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/ragout-2.3.egg-info/top_level.txt
/usr/lib/python3/dist-packages/ragout/assembly_graph/assembly_refine.py
/usr/lib/python3/dist-packages/ragout/assembly_graph/__init__.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/breakpoint_graph.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/chimera_detector.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/inferer.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/__init__.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/permutation.py
/usr/lib/python3/dist-packages/ragout/breakpoint_graph/repeat_resolver.py
/usr/lib/python3/dist-packages/ragout/__init__.py
/usr/lib/python3/dist-packages/ragout/maf2synteny/__init__.py
/usr/lib/python3/dist-packages/ragout/maf2synteny/maf2synteny.py
/usr/lib/python3/dist-packages/ragout/main.py
/usr/lib/python3/dist-packages/ragout/newick/__init__.py
/usr/lib/python3/dist-packages/ragout/newick/lexer.py
/usr/lib/python3/dist-packages/ragout/newick/parser.py
/usr/lib/python3/dist-packages/ragout/newick/tokens.py
/usr/lib/python3/dist-packages/ragout/newick/tree.py
/usr/lib/python3/dist-packages/ragout/overlap/__init__.py
/usr/lib/python3/dist-packages/ragout/overlap/overlap.py
/usr/lib/python3/dist-packages/ragout/parsers/fasta_parser.py
/usr/lib/python3/dist-packages/ragout/parsers/__init__.py
/usr/lib/python3/dist-packages/ragout/parsers/phylogeny_parser.py
/usr/lib/python3/dist-packages/ragout/parsers/recipe_parser.py
/usr/lib/python3/dist-packages/ragout/phylogeny/inferer.py
/usr/lib/python3/dist-packages/ragout/phylogeny/__init__.py
/usr/lib/python3/dist-packages/ragout/phylogeny/phylogeny.py
/usr/lib/python3/dist-packages/ragout/scaffolder/__init__.py
/usr/lib/python3/dist-packages/ragout/scaffolder/merge_iters.py
/usr/lib/python3/dist-packages/ragout/scaffolder/output_generator.py
/usr/lib/python3/dist-packages/ragout/scaffolder/scaffolder.py
/usr/lib/python3/dist-packages/ragout/shared/config.py
/usr/lib/python3/dist-packages/ragout/shared/datatypes.py
/usr/lib/python3/dist-packages/ragout/shared/debug.py
/usr/lib/python3/dist-packages/ragout/shared/__init__.py
/usr/lib/python3/dist-packages/ragout/shared/utils.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/cactus.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/hal.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/__init__.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/maf.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/sibelia.py
/usr/lib/python3/dist-packages/ragout/synteny_backend/synteny_backend.py
/usr/lib/python3/dist-packages/ragout/tests/data/DH1.fasta
/usr/lib/python3/dist-packages/ragout/tests/data/ecoli.rcp
/usr/lib/python3/dist-packages/ragout/tests/data/mg1655_contigs.fasta
/usr/lib/python3/dist-packages/ragout/tests/data/mg1655.coords
/usr/lib/python3/dist-packages/ragout/tests/__init__.py
/usr/lib/python3/dist-packages/ragout/tests/test_toy.py
/usr/lib/python3/dist-packages/ragout/__version__.py
/usr/share/doc/ragout/changelog.Debian.arm64.gz
/usr/share/doc/ragout/changelog.Debian.gz
/usr/share/doc/ragout/copyright
/usr/share/man/man1/ragout.1.gz
/usr/share/man/man1/ragout-maf2synteny.1.gz
/usr/share/man/man1/ragout-overlap.1.gz

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

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Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.3-5+b2	trixie / main	arm64	Debian 13 · main · arm64	2.0 MiB	9.4 MiB	pool/main/r/ragout/ragout_2.3-5+b2_arm64.deb
2.3-5	trixie / main	amd64	Debian 13 · main · amd64	2.0 MiB	9.4 MiB	pool/main/r/ragout/ragout_2.3-5_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.3-5+b2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: ccf9ac692e7d4767fef046a7250184ba89a24e5bcc56ca73420e015dba97235d

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'ccf9ac692e7d4767fef046a7250184ba89a24e5bcc56ca73420e015dba97235d' 'ragout_2.3-5+b2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

2.3-5 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 617e5a16b2fefc5cc4cc319a056e0ba57ea893aafa5e272e0f8d57e520e294ec

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '617e5a16b2fefc5cc4cc319a056e0ba57ea893aafa5e272e0f8d57e520e294ec' 'ragout_2.3-5_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified