Debian 13 (Trixie) native package

rate4site

detector of conserved amino-acid sites

Packages / Debian 13 (Trixie) / science / rate4site

[Source: rate4site]

Package: rate4site (3.0.0-8+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.tau.ac.il]

detector of conserved amino-acid sites

Other Packages Related to rate4site:

dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 4.0)
GCC support library
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3

Download rate4site

Architecture	Package Size	Installed Size	Files
amd64	611 KiB	5.3 MiB	[list of files]
arm64	566 KiB	5.3 MiB	[list of files]

Caminhos de arquivo do pacote (128)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/rate4site
/usr/bin/rate4site_doublerep
/usr/include/libphylo/aaJC.h
/usr/include/libphylo/adrianCodon.dat.q
/usr/include/libphylo/alphabet.h
/usr/include/libphylo/amino.h
/usr/include/libphylo/bblEM.h
/usr/include/libphylo/bblEMProportionalEB.h
/usr/include/libphylo/bblLSProportionalEB.h
/usr/include/libphylo/bestAlpha.h
/usr/include/libphylo/bestGtrModelParams.h
/usr/include/libphylo/bestHKYparam.h
/usr/include/libphylo/bestTamura92param.h
/usr/include/libphylo/chebyshevAccelerator.h
/usr/include/libphylo/checkcovFanctors.h
/usr/include/libphylo/checkcovFanctorsWithFactors.h
/usr/include/libphylo/clustalFormat.h
/usr/include/libphylo/codon.h
/usr/include/libphylo/computeCounts.h
/usr/include/libphylo/computeDownAlg.h
/usr/include/libphylo/computePijComponent.h
/usr/include/libphylo/computePosteriorExpectationOfSubstitutions.h
/usr/include/libphylo/computePosteriorExpectationOfSubstitutions_nonReversibleSp.h
/usr/include/libphylo/computeSubstitutionCounts.h
/usr/include/libphylo/computeUpAlg.h
/usr/include/libphylo/ConversionUtils.h
/usr/include/libphylo/countTableComponent.h
/usr/include/libphylo/cpREV45.dat
/usr/include/libphylo/cpREV45.dat.q
/usr/include/libphylo/datMatrixHolder.h
/usr/include/libphylo/dayhoff.dat
/usr/include/libphylo/dayhoff.dat.q
/usr/include/libphylo/definitions.h
/usr/include/libphylo/distanceMethod.h
/usr/include/libphylo/distances2Tree.h
/usr/include/libphylo/distanceTable.h
/usr/include/libphylo/distribution.h
/usr/include/libphylo/doubleRep.h
/usr/include/libphylo/errorMsg.h
/usr/include/libphylo/evaluateCharacterFreq.h
/usr/include/libphylo/fastaFormat.h
/usr/include/libphylo/fastStartTree.h
/usr/include/libphylo/fromCountTableComponentToDistance.h
/usr/include/libphylo/fromCountTableComponentToDistancePropEB.h
/usr/include/libphylo/fromQtoPt.h
/usr/include/libphylo/gainLossAlphabet.h
/usr/include/libphylo/gammaDistribution.h
/usr/include/libphylo/gammaUtilities.h
/usr/include/libphylo/generalGammaDistribution.h
/usr/include/libphylo/geneticCodeHolder.h
/usr/include/libphylo/getopt.h
/usr/include/libphylo/getRandomWeights.h
/usr/include/libphylo/gtrModel.h
/usr/include/libphylo/HIVb.dat.q
/usr/include/libphylo/HIVw.dat.q
/usr/include/libphylo/hky.h
/usr/include/libphylo/jcDistance.h
/usr/include/libphylo/jones.dat
/usr/include/libphylo/jones.dat.q
/usr/include/libphylo/LG.dat.q
/usr/include/libphylo/likeDist.h
/usr/include/libphylo/likeDistPropEB.h
/usr/include/libphylo/likelihoodComputationFactors.h
/usr/include/libphylo/likelihoodComputationGL.h
/usr/include/libphylo/likelihoodComputation.h
/usr/include/libphylo/logFile.h
/usr/include/libphylo/maseFormat.h
/usr/include/libphylo/matrixUtils.h
/usr/include/libphylo/mitochondriaAscidian.code
/usr/include/libphylo/mitochondriaEchinoderm.code
/usr/include/libphylo/mitochondriaFlatworm.code
/usr/include/libphylo/mitochondriaInvertebrate.code
/usr/include/libphylo/mitochondriaProtozoan.code
/usr/include/libphylo/mitochondriaVertebrate.code
/usr/include/libphylo/mitochondriaYeast.code
/usr/include/libphylo/molphyFormat.h
/usr/include/libphylo/mtREV24.dat
/usr/include/libphylo/mtREV24.dat.q
/usr/include/libphylo/mulAlphabet.h
/usr/include/libphylo/multipleStochasticProcess.h
/usr/include/libphylo/nexusFormat.h
/usr/include/libphylo/njConstrain.h
/usr/include/libphylo/nj.h
/usr/include/libphylo/nucJC.h
/usr/include/libphylo/nuclearBlepharisma.code
/usr/include/libphylo/nuclearCiliate.code
/usr/include/libphylo/nuclearEuplotid.code
/usr/include/libphylo/nuclearStandard.code
/usr/include/libphylo/nucleotide.h
/usr/include/libphylo/numRec.h
/usr/include/libphylo/phylipFormat.h
/usr/include/libphylo/phylipSequentialFormat.h
/usr/include/libphylo/pijAccelerator.h
/usr/include/libphylo/readDatMatrix.h
/usr/include/libphylo/readTree.h
/usr/include/libphylo/recognizeFormat.h
/usr/include/libphylo/replacementModel.h
/usr/include/libphylo/seqContainerTreeMap.h
/usr/include/libphylo/sequenceContainer.h
/usr/include/libphylo/sequence.h
/usr/include/libphylo/simulateCodonsJumps.h
/usr/include/libphylo/simulateJumpsAbstract.h
/usr/include/libphylo/simulateJumps.h
/usr/include/libphylo/siteSpecificRate.h
/usr/include/libphylo/someUtil.h
/usr/include/libphylo/stochasticProcess.h
/usr/include/libphylo/suffStatComponent.h
/usr/include/libphylo/talRandom.h
/usr/include/libphylo/tamura92.h
/usr/include/libphylo/tree.h
/usr/include/libphylo/treeIt.h
/usr/include/libphylo/treeUtil.h
/usr/include/libphylo/trivialAccelerator.h
/usr/include/libphylo/uniDistribution.h
/usr/include/libphylo/uniformDistribution.h
/usr/include/libphylo/unObservableData.h
/usr/include/libphylo/wag.dat
/usr/include/libphylo/wag.dat.q
/usr/lib/aarch64-linux-gnu/libphylo.a
/usr/lib/x86_64-linux-gnu/libphylo.a
/usr/share/doc/rate4site/changelog.Debian.arm64.gz
/usr/share/doc/rate4site/changelog.Debian.gz
/usr/share/doc/rate4site/changelog.gz
/usr/share/doc/rate4site/copyright
/usr/share/doc/rate4site/installation-test
/usr/share/doc/rate4site/README.test
/usr/share/man/man1/rate4site.1.gz
/usr/share/man/man1/rate4site_doublerep.1.gz

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 13 (Trixie) no navegador Construir uma imagem que inclui rate4site

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
3.0.0-8+b1	trixie / main	arm64	Debian 13 · main · arm64	566 KiB	5.3 MiB	pool/main/r/rate4site/rate4site_3.0.0-8+b1_arm64.deb
3.0.0-8	trixie / main	amd64	Debian 13 · main · amd64	611 KiB	5.3 MiB	pool/main/r/rate4site/rate4site_3.0.0-8_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3.0.0-8+b1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: cfe1094566168de31b066a2aa82e7742c1c253bf9ad7f5c14b87540f5f9d3c0a

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'cfe1094566168de31b066a2aa82e7742c1c253bf9ad7f5c14b87540f5f9d3c0a' 'rate4site_3.0.0-8+b1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

3.0.0-8 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 4949f4e6079df6d7220a961bddc1adc96f034b1e73cbe3fb20d81a47660a7120

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '4949f4e6079df6d7220a961bddc1adc96f034b1e73cbe3fb20d81a47660a7120' 'rate4site_3.0.0-8_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified