Linux workstation

Debian 13 (Trixie) native package

sra-toolkit

utilities for the NCBI Sequence Read Archive

Packages / Debian 13 (Trixie) / science / sra-toolkit

[Source: sra-sdk]

Package: sra-toolkit (3.2.1+dfsg-4)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

  • [libncbi-ngs3]

    Next Generation Sequencing language Bindings (full runtime)

  • [libncbi-ngs-dev]

    Next Generation Sequencing language Bindings (C++ development)

  • [libngs-c++3]

    Next Generation Sequencing language Bindings (C++ runtime)

  • [libngs-c++-dev]

    Next Generation Sequencing language Bindings (C++ development)

  • [libngs-java]

    Next Generation Sequencing language Bindings (Java bindings)

  • [libngs-java-doc]

    Next Generation Sequencing language Bindings (Java documentation)

  • [libngs-jni]

    Next Generation Sequencing language Bindings (Java native binding)

  • [python3-ngs]

    Next Generation Sequencing language Bindings (Python3 bindings)

utilities for the NCBI Sequence Read Archive

Other Packages Related to sra-toolkit:

  • dep: [libabsl20240722] (>= 20240722.0-1)

    extensions to the C++ standard library

  • dep: [libbz2-1.0]

    high-quality block-sorting file compressor library - runtime

  • dep: [libc6] (>= 2.38)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [libhdf5-310] (>= 1.14.3)

    HDF5 C runtime files - serial version

  • dep: [libmagic1t64] (>= 5.12)

    Recognize the type of data in a file using "magic" numbers - library

  • dep: [libncbi-vdb3] (>= 3.2.1+dfsg)

    libraries for using data in the INSDC Sequence Read Archives

  • dep: [libncbi-wvdb3] (>= 3.2.1+dfsg)

    virtual layer update module of ncbi-vdb library

  • dep: libre2-11-absl20240722

    Package not available

  • dep: [libstdc++6] (>= 14)

    GNU Standard C++ Library v3

  • dep: [libxml2] (>= 2.7.4)

    GNOME XML library

  • dep: [zlib1g] (>= 1:1.2.2)

    compression library - runtime

  • rec: [med-config]

    Debian Med general config package

Download sra-toolkit

ArchitecturePackage SizeInstalled SizeFiles
amd646.9 MiB20 MiB[list of files]
arm646.7 MiB22 MiB[list of files]

Caminhos de arquivo do pacote (98)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /etc/ncbi/certs.kfg
  • /etc/ncbi/default.kfg
  • /etc/ncbi/vdb-copy.kfg
  • /usr/bin/abi-dump
  • /usr/bin/abi-load
  • /usr/bin/align-cache
  • /usr/bin/align-info
  • /usr/bin/bam-load
  • /usr/bin/cache-mgr
  • /usr/bin/ccextract
  • /usr/bin/cg-load
  • /usr/bin/check-corrupt
  • /usr/bin/check-redact
  • /usr/bin/compute-coverage
  • /usr/bin/compute-coverage-ngs
  • /usr/bin/copycat
  • /usr/bin/crc32sum
  • /usr/bin/dump-blob-boundaries
  • /usr/bin/dump-ref-fasta
  • /usr/bin/fastconv
  • /usr/bin/fasterq-dump
  • /usr/bin/fastq-dump
  • /usr/bin/fastq-load
  • /usr/bin/general-loader
  • /usr/bin/helicos-load
  • /usr/bin/illumina-dump
  • /usr/bin/illumina-load
  • /usr/bin/kar
  • /usr/bin/kar+
  • /usr/bin/kar+meta
  • /usr/bin/kdb-index
  • /usr/bin/kdbmeta
  • /usr/bin/latf-load
  • /usr/bin/make-read-filter
  • /usr/bin/md5cp
  • /usr/bin/meta-cmp
  • /usr/bin/meta-copy
  • /usr/bin/meta-repair
  • /usr/bin/ngs-pileup
  • /usr/bin/pacbio-correct
  • /usr/bin/pacbio-load
  • /usr/bin/pacbio-loadxml
  • /usr/bin/pileup-stats
  • /usr/bin/prefetch
  • /usr/bin/rcexplain
  • /usr/bin/read-filter-redact
  • /usr/bin/ref-variation
  • /usr/bin/rowwritetest
  • /usr/bin/sam-dump
  • /usr/bin/samview
  • /usr/bin/samview-util
  • /usr/bin/schema-replace
  • /usr/bin/sff-dump
  • /usr/bin/sff-load
  • /usr/bin/sharq
  • /usr/bin/sortreadtest
  • /usr/bin/sra-info
  • /usr/bin/srapath
  • /usr/bin/sra-pileup
  • /usr/bin/sra-search
  • /usr/bin/sra-sort
  • /usr/bin/sra-sort-cg
  • /usr/bin/sra-stat
  • /usr/bin/srf-load
  • /usr/bin/test-download
  • /usr/bin/testld
  • /usr/bin/test-read-write-cursor
  • /usr/bin/test-sra
  • /usr/bin/txt2kdb
  • /usr/bin/var-expand
  • /usr/bin/vdb-config
  • /usr/bin/vdb-copy
  • /usr/bin/vdb-decrypt
  • /usr/bin/vdb-diff
  • /usr/bin/vdb-dump
  • /usr/bin/vdb-encrypt
  • /usr/bin/vdb-lock
  • /usr/bin/vdb-sql
  • /usr/bin/vdb-unlock
  • /usr/bin/vdb-validate
  • /usr/lib/sra-toolkit/fasterq-dump-orig
  • /usr/lib/sra-toolkit/fastq-dump-orig
  • /usr/lib/sra-toolkit/prefetch-orig
  • /usr/lib/sra-toolkit/sam-dump-orig
  • /usr/lib/sra-toolkit/srapath-orig
  • /usr/lib/sra-toolkit/sra-pileup-orig
  • /usr/lib/sra-toolkit/sratools
  • /usr/lib/sra-toolkit/vdb-dump-orig
  • /usr/share/doc/sra-toolkit/changelog.Debian.gz
  • /usr/share/doc/sra-toolkit/changelog.gz
  • /usr/share/doc/sra-toolkit/copyright
  • /usr/share/doc/sra-toolkit/README-blastn
  • /usr/share/doc/sra-toolkit/README.Debian
  • /usr/share/doc/sra-toolkit/README.md.gz
  • /usr/share/doc/sra-toolkit/README.test
  • /usr/share/doc/sra-toolkit/README-vdb-config.gz
  • /usr/share/doc/sra-toolkit/run-unit-test
  • /usr/share/doc/sra-toolkit/test-data.tar.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Usar este pacote

O OpenFactory pode iniciar este sistema operacional em uma máquina virtual do navegador, ou começar uma construção que inclui o nome nativo do pacote deste registro.

Experimentar Debian 13 (Trixie) no navegadorConstruir uma imagem que inclui sra-toolkit

Versões, suites e repositórios

Cada linha é metadado do índice de pacotes para uma versão, arquitetura, suite e repositório. Nomes, URLs e tamanhos vêm da fonte; um link é um ponto de obtenção mutável, não uma redistribuição da OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
3.2.1+dfsg-4trixie / mainamd64Debian 13 · main · amd646.9 MiB20 MiBpool/main/s/sra-sdk/sra-toolkit_3.2.1+dfsg-4_amd64.deb
3.2.1+dfsg-4trixie / mainarm64Debian 13 · main · arm646.7 MiB22 MiBpool/main/s/sra-sdk/sra-toolkit_3.2.1+dfsg-4_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums e datas de observação

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

3.2.1+dfsg-4 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: c2a8f7933b0f86665f0669fb4559b818ccda40c9b2967e25f7297d137199ad50

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'c2a8f7933b0f86665f0669fb4559b818ccda40c9b2967e25f7297d137199ad50' 'sra-toolkit_3.2.1+dfsg-4_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

3.2.1+dfsg-4 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e25feb12f0ce0c7bd42416921dcf5c581b35def8ff9488568e9c4c4e9f4d75ad

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'e25feb12f0ce0c7bd42416921dcf5c581b35def8ff9488568e9c4c4e9f4d75ad' 'sra-toolkit_3.2.1+dfsg-4_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Completude do registro

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Fontes e proveniência

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified

sra-toolkit Package for Debian 13 (Trixie) | OpenFactory