Debian 12 (Bookworm) native package

bcftools

genomic variant calling and manipulation of VCF/BCF files

Packages / Debian 12 (Bookworm) / science / bcftools

Package: bcftools (1.16-1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [samtools.github.io]

genomic variant calling and manipulation of VCF/BCF files

Other Packages Related to bcftools:

dep: [libc6] (>= 2.34)
GNU C Library: Shared libraries
dep: [libhts3] (>= 1.16)
C library for high-throughput sequencing data formats

rec: [perl]
Larry Wall's Practical Extraction and Report Language

sug: [python3]
interactive high-level object-oriented language (default python3 version)
sug: [python3-numpy]
Fast array facility to the Python 3 language
sug: [python3-matplotlib]
Python based plotting system in a style similar to Matlab (Python 3)
sug: [texlive-latex-recommended]
TeX Live: LaTeX recommended packages

Download bcftools

Architecture	Package Size	Installed Size	Files
amd64	676 KiB	2.4 MiB	[list of files]
arm64	610 KiB	3.9 MiB	[list of files]

Шляхи файлів пакета (94)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/bcftools
/usr/bin/color-chrs.pl
/usr/bin/gff2gff.py
/usr/bin/guess-ploidy.py
/usr/bin/plot-roh.py
/usr/bin/plot-vcfstats
/usr/bin/run-roh.pl
/usr/bin/vcfutils.pl
/usr/lib/aarch64-linux-gnu/bcftools/ad-bias.so
/usr/lib/aarch64-linux-gnu/bcftools/add-variantkey.so
/usr/lib/aarch64-linux-gnu/bcftools/af-dist.so
/usr/lib/aarch64-linux-gnu/bcftools/allele-length.so
/usr/lib/aarch64-linux-gnu/bcftools/check-ploidy.so
/usr/lib/aarch64-linux-gnu/bcftools/check-sparsity.so
/usr/lib/aarch64-linux-gnu/bcftools/color-chrs.so
/usr/lib/aarch64-linux-gnu/bcftools/contrast.so
/usr/lib/aarch64-linux-gnu/bcftools/counts.so
/usr/lib/aarch64-linux-gnu/bcftools/dosage.so
/usr/lib/aarch64-linux-gnu/bcftools/fill-AN-AC.so
/usr/lib/aarch64-linux-gnu/bcftools/fill-from-fasta.so
/usr/lib/aarch64-linux-gnu/bcftools/fill-tags.so
/usr/lib/aarch64-linux-gnu/bcftools/fixploidy.so
/usr/lib/aarch64-linux-gnu/bcftools/fixref.so
/usr/lib/aarch64-linux-gnu/bcftools/frameshifts.so
/usr/lib/aarch64-linux-gnu/bcftools/GTisec.so
/usr/lib/aarch64-linux-gnu/bcftools/GTsubset.so
/usr/lib/aarch64-linux-gnu/bcftools/guess-ploidy.so
/usr/lib/aarch64-linux-gnu/bcftools/gvcfz.so
/usr/lib/aarch64-linux-gnu/bcftools/impute-info.so
/usr/lib/aarch64-linux-gnu/bcftools/indel-stats.so
/usr/lib/aarch64-linux-gnu/bcftools/isecGT.so
/usr/lib/aarch64-linux-gnu/bcftools/mendelian.so
/usr/lib/aarch64-linux-gnu/bcftools/missing2ref.so
/usr/lib/aarch64-linux-gnu/bcftools/parental-origin.so
/usr/lib/aarch64-linux-gnu/bcftools/prune.so
/usr/lib/aarch64-linux-gnu/bcftools/remove-overlaps.so
/usr/lib/aarch64-linux-gnu/bcftools/scatter.so
/usr/lib/aarch64-linux-gnu/bcftools/setGT.so
/usr/lib/aarch64-linux-gnu/bcftools/smpl-stats.so
/usr/lib/aarch64-linux-gnu/bcftools/split.so
/usr/lib/aarch64-linux-gnu/bcftools/split-vep.so
/usr/lib/aarch64-linux-gnu/bcftools/tag2tag.so
/usr/lib/aarch64-linux-gnu/bcftools/trio-dnm2.so
/usr/lib/aarch64-linux-gnu/bcftools/trio-stats.so
/usr/lib/aarch64-linux-gnu/bcftools/trio-switch-rate.so
/usr/lib/aarch64-linux-gnu/bcftools/variant-distance.so
/usr/lib/aarch64-linux-gnu/bcftools/variantkey-hex.so
/usr/lib/x86_64-linux-gnu/bcftools/ad-bias.so
/usr/lib/x86_64-linux-gnu/bcftools/add-variantkey.so
/usr/lib/x86_64-linux-gnu/bcftools/af-dist.so
/usr/lib/x86_64-linux-gnu/bcftools/allele-length.so
/usr/lib/x86_64-linux-gnu/bcftools/check-ploidy.so
/usr/lib/x86_64-linux-gnu/bcftools/check-sparsity.so
/usr/lib/x86_64-linux-gnu/bcftools/color-chrs.so
/usr/lib/x86_64-linux-gnu/bcftools/contrast.so
/usr/lib/x86_64-linux-gnu/bcftools/counts.so
/usr/lib/x86_64-linux-gnu/bcftools/dosage.so
/usr/lib/x86_64-linux-gnu/bcftools/fill-AN-AC.so
/usr/lib/x86_64-linux-gnu/bcftools/fill-from-fasta.so
/usr/lib/x86_64-linux-gnu/bcftools/fill-tags.so
/usr/lib/x86_64-linux-gnu/bcftools/fixploidy.so
/usr/lib/x86_64-linux-gnu/bcftools/fixref.so
/usr/lib/x86_64-linux-gnu/bcftools/frameshifts.so
/usr/lib/x86_64-linux-gnu/bcftools/GTisec.so
/usr/lib/x86_64-linux-gnu/bcftools/GTsubset.so
/usr/lib/x86_64-linux-gnu/bcftools/guess-ploidy.so
/usr/lib/x86_64-linux-gnu/bcftools/gvcfz.so
/usr/lib/x86_64-linux-gnu/bcftools/impute-info.so
/usr/lib/x86_64-linux-gnu/bcftools/indel-stats.so
/usr/lib/x86_64-linux-gnu/bcftools/isecGT.so
/usr/lib/x86_64-linux-gnu/bcftools/mendelian.so
/usr/lib/x86_64-linux-gnu/bcftools/missing2ref.so
/usr/lib/x86_64-linux-gnu/bcftools/parental-origin.so
/usr/lib/x86_64-linux-gnu/bcftools/prune.so
/usr/lib/x86_64-linux-gnu/bcftools/remove-overlaps.so
/usr/lib/x86_64-linux-gnu/bcftools/scatter.so
/usr/lib/x86_64-linux-gnu/bcftools/setGT.so
/usr/lib/x86_64-linux-gnu/bcftools/smpl-stats.so
/usr/lib/x86_64-linux-gnu/bcftools/split.so
/usr/lib/x86_64-linux-gnu/bcftools/split-vep.so
/usr/lib/x86_64-linux-gnu/bcftools/tag2tag.so
/usr/lib/x86_64-linux-gnu/bcftools/trio-dnm2.so
/usr/lib/x86_64-linux-gnu/bcftools/trio-stats.so
/usr/lib/x86_64-linux-gnu/bcftools/trio-switch-rate.so
/usr/lib/x86_64-linux-gnu/bcftools/variant-distance.so
/usr/lib/x86_64-linux-gnu/bcftools/variantkey-hex.so
/usr/share/doc/bcftools/changelog.Debian.gz
/usr/share/doc/bcftools/copyright
/usr/share/doc/bcftools/README
/usr/share/lintian/overrides/bcftools
/usr/share/man/man1/bcftools.1.gz
/usr/share/man/man1/color-chrs.pl.1.gz
/usr/share/man/man1/plot-vcfstats.1.gz
/usr/share/man/man1/vcfutils.pl.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 12 (Bookworm) у браузері Зібрати образ, що містить bcftools

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.16-1	bookworm / main	amd64	Debian 12 · main · amd64	676 KiB	2.4 MiB	pool/main/b/bcftools/bcftools_1.16-1_amd64.deb
1.16-1	bookworm / main	arm64	Debian 12 · main · arm64	610 KiB	3.9 MiB	pool/main/b/bcftools/bcftools_1.16-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.16-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: d6ae8a3e98b601014bfca11184a3b8da1c9a3c003967b71655da8ef7b8d5edf1

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'd6ae8a3e98b601014bfca11184a3b8da1c9a3c003967b71655da8ef7b8d5edf1' 'bcftools_1.16-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.16-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 0359ce635281c51fb184d712f37d6638c95c05a16cc6b17245b4c56511ac94c0

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '0359ce635281c51fb184d712f37d6638c95c05a16cc6b17245b4c56511ac94c0' 'bcftools_1.16-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified