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Debian 13 (Trixie) native package

lumpy-sv

general probabilistic framework for structural variant discovery

Packages / Debian 13 (Trixie) / science / lumpy-sv

[Source: lumpy-sv]

Package: lumpy-sv (0.3.1+dfsg-7+b2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

Similar packages:

  • [lumpy-sv-examples]

    general probabilistic framework for structural variant discovery (data)

general probabilistic framework for structural variant discovery

Other Packages Related to lumpy-sv:

  • dep: [libbamtools2.5.2] (>= 2.5.2+dfsg)

    dynamic library for manipulating BAM (genome alignment) files

  • dep: [libc6] (>= 2.38)

    GNU C Library: Shared libraries

  • dep: [libgcc-s1] (>= 3.0)

    GCC support library

  • dep: [libgzstream0] (>= 1.5+git20171107.9a20658)

    provide functionality of zlib C-library in a C++ iostream

  • dep: [libhts3t64] (>= 1.17)

    C library for high-throughput sequencing data formats

  • dep: [libstdc++6] (>= 13.1)

    GNU Standard C++ Library v3

  • dep: [python3] [any]

    interactive high-level object-oriented language (default python3 version)

  • dep: [samblaster]

    marks duplicates, extracts discordant/split reads

  • dep: [samtools]

    processing sequence alignments in SAM, BAM and CRAM formats

  • dep: [python3]

    interactive high-level object-oriented language (default python3 version)

  • dep: [python3-pysam]

    interface for the SAM/BAM sequence alignment and mapping format (Python 3)

  • dep: [python3-numpy]

    Python library for numerical computations (Python 3)

  • dep: [bamkit]

    tools for common BAM file manipulations

  • rec: [sambamba]

    tools for working with SAM/BAM data

Download lumpy-sv

ArchitecturePackage SizeInstalled SizeFiles
amd64205 KiB689 KiB[list of files]
arm64172 KiB677 KiB[list of files]

Шляхи файлів пакета (32)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /etc/lumpy-sv/lumpyexpress.config
  • /usr/bin/lumpy
  • /usr/bin/lumpyexpress
  • /usr/bin/lumpy_filter
  • /usr/share/doc/lumpy-sv/changelog.Debian.amd64.gz
  • /usr/share/doc/lumpy-sv/changelog.Debian.arm64.gz
  • /usr/share/doc/lumpy-sv/changelog.Debian.gz
  • /usr/share/doc/lumpy-sv/copyright
  • /usr/share/doc/lumpy-sv/README.md.gz
  • /usr/share/lumpy-sv/scripts/bedpe_sort.py
  • /usr/share/lumpy-sv/scripts/check_sorting.py
  • /usr/share/lumpy-sv/scripts/cnvanator_to_bedpes.py
  • /usr/share/lumpy-sv/scripts/extract-sites.py
  • /usr/share/lumpy-sv/scripts/extractSplitReads_BwaMem
  • /usr/share/lumpy-sv/scripts/get_coverages.py
  • /usr/share/lumpy-sv/scripts/get_exclude_regions.py
  • /usr/share/lumpy-sv/scripts/l_bp.py
  • /usr/share/lumpy-sv/scripts/l_merge.py
  • /usr/share/lumpy-sv/scripts/l_sort.py
  • /usr/share/lumpy-sv/scripts/lumpyexpress
  • /usr/share/lumpy-sv/scripts/lumpyexpress.config
  • /usr/share/lumpy-sv/scripts/lumpy_smooth
  • /usr/share/lumpy-sv/scripts/pairend_distro.py
  • /usr/share/lumpy-sv/scripts/par-svtyper.sh
  • /usr/share/lumpy-sv/scripts/prob_bedpe_to_bedgraph.py
  • /usr/share/lumpy-sv/scripts/run_histo.sh
  • /usr/share/lumpy-sv/scripts/split_unmapped_to_fasta.pl
  • /usr/share/lumpy-sv/scripts/vcfToBedpe
  • /usr/share/man/man1/lumpy.1.gz
  • /usr/share/man/man1/lumpyexpress.1.gz
  • /usr/share/man/man1/lumpy_filter.1.gz
  • /usr/share/python3/runtime.d/lumpy-sv.rtupdate

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузеріЗібрати образ, що містить lumpy-sv

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
0.3.1+dfsg-7+b2trixie / mainarm64Debian 13 · main · arm64172 KiB677 KiBpool/main/l/lumpy-sv/lumpy-sv_0.3.1+dfsg-7+b2_arm64.deb
0.3.1+dfsg-7+b1trixie / mainamd64Debian 13 · main · amd64205 KiB689 KiBpool/main/l/lumpy-sv/lumpy-sv_0.3.1+dfsg-7+b1_amd64.deb

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

0.3.1+dfsg-7+b2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: da8a4168a3c6fc0bd6e0d1cc9a35845f1a37c4207fbdeef9c1087781721e1979

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'da8a4168a3c6fc0bd6e0d1cc9a35845f1a37c4207fbdeef9c1087781721e1979' 'lumpy-sv_0.3.1+dfsg-7+b2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

0.3.1+dfsg-7+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 3bfb3382047a056b2d7f8c0de4cc7b3530fcc16d0ab416ae2e564b60bed27221

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '3bfb3382047a056b2d7f8c0de4cc7b3530fcc16d0ab416ae2e564b60bed27221' 'lumpy-sv_0.3.1+dfsg-7+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified

lumpy-sv Package for Debian 13 (Trixie) | OpenFactory