Debian 13 (Trixie) native package

reapr

universal tool for genome assembly evaluation

Packages / Debian 13 (Trixie) / science / reapr

Package: reapr (1.0.18+dfsg-7)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [www.sanger.ac.uk]

universal tool for genome assembly evaluation

Other Packages Related to reapr:

dep: [libbamtools2.5.2] (>= 2.5.2+dfsg)
dynamic library for manipulating BAM (genome alignment) files
dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libstdc++6] (>= 13.1)
GNU Standard C++ Library v3
dep: [libtabixpp0t64] (>= 1.0.0)
C++ wrapper to tabix indexer
dep: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats
dep: [bamtools]
toolkit for manipulating BAM (genome alignment) files
dep: [smalt]
Sequence Mapping and Alignment Tool
dep: [r-base]
GNU R statistical computation and graphics system
dep: [snpomatic]
fast, stringent short-read mapping software
dep: [tabix]
generic indexer for TAB-delimited genome position files
dep: [libfile-copy-link-perl]
Perl extension for replacing a link by a copy of the linked file

Download reapr

Architecture	Package Size	Installed Size	Files
amd64	210 KiB	1.0 MiB	[list of files]
arm64	179 KiB	1.2 MiB	[list of files]

Шляхи файлів пакета (42)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/reapr
/usr/lib/reapr/bam2fcdEstimate
/usr/lib/reapr/bam2fragCov
/usr/lib/reapr/bam2insert
/usr/lib/reapr/bam2perfect
/usr/lib/reapr/fa2gaps
/usr/lib/reapr/fa2gc
/usr/lib/reapr/make_plots
/usr/lib/reapr/n50
/usr/lib/reapr/reapr.pl
/usr/lib/reapr/scaff2contig
/usr/lib/reapr/task_break
/usr/lib/reapr/task_facheck.pl
/usr/lib/reapr/task_fcdrate
/usr/lib/reapr/task_gapresize
/usr/lib/reapr/task_perfectfrombam.pl
/usr/lib/reapr/task_perfectmap.pl
/usr/lib/reapr/task_pipeline.pl
/usr/lib/reapr/task_plots.pl
/usr/lib/reapr/task_preprocess.pl
/usr/lib/reapr/task_score
/usr/lib/reapr/task_seqrename.pl
/usr/lib/reapr/task_smaltmap.pl
/usr/lib/reapr/task_stats
/usr/lib/reapr/task_summary.pl
/usr/share/doc/reapr/changelog.Debian.gz
/usr/share/doc/reapr/changelog.gz
/usr/share/doc/reapr/copyright
/usr/share/man/man1/reapr.1.gz
/usr/share/man/man1/reapr-break.1.gz
/usr/share/man/man1/reapr-facheck.1.gz
/usr/share/man/man1/reapr-gapresize.1.gz
/usr/share/man/man1/reapr-perfectfrombam.1.gz
/usr/share/man/man1/reapr-perfectmap.1.gz
/usr/share/man/man1/reapr-pipeline.1.gz
/usr/share/man/man1/reapr-plots.1.gz
/usr/share/man/man1/reapr-preprocess.1.gz
/usr/share/man/man1/reapr-score.1.gz
/usr/share/man/man1/reapr-seqrename.1.gz
/usr/share/man/man1/reapr-smaltmap.1.gz
/usr/share/man/man1/reapr-stats.1.gz
/usr/share/man/man1/reapr-summary.1.gz

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузері Зібрати образ, що містить reapr

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.0.18+dfsg-7	trixie / main	amd64	Debian 13 · main · amd64	210 KiB	1.0 MiB	pool/main/r/reapr/reapr_1.0.18+dfsg-7_amd64.deb
1.0.18+dfsg-7	trixie / main	arm64	Debian 13 · main · arm64	179 KiB	1.2 MiB	pool/main/r/reapr/reapr_1.0.18+dfsg-7_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.0.18+dfsg-7 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 640f977f7fed317fcc281e81355a430dc0f4bf687f5f8eb0f5f4aba343e7b7cc

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '640f977f7fed317fcc281e81355a430dc0f4bf687f5f8eb0f5f4aba343e7b7cc' 'reapr_1.0.18+dfsg-7_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.0.18+dfsg-7 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 64df5413760553edd60ef7563041f6221612f0c1f5daad73fa74684a8cc4c25f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '64df5413760553edd60ef7563041f6221612f0c1f5daad73fa74684a8cc4c25f' 'reapr_1.0.18+dfsg-7_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified