Package: bcbio (1.2.9-2) toolkit for analysing high-throughput sequencing data Other Packages Related to bcbio: [bcftools ]
genomic variant calling and manipulation of VCF/BCF files
[bwa ]
Burrows-Wheeler Aligner
[cnvkit ]
Copy number variant detection from targeted DNA sequencing
[cufflinks ]
Transcript assembly, differential expression and regulation for RNA-Seq
[delly ]
Structural variant discovery by read analysis
[fastqc ]
quality control for high throughput sequence data
[freebayes ]
Bayesian haplotype-based polymorphism discovery and genotyping
[grabix ]
wee tool for random access into BGZF files
[libvcflib-tools ]
C++ library for parsing and manipulating VCF files (tools)
[macs ]
Model-based Analysis of ChIP-Seq on short reads sequencers
[pythonpy ]
'python -c', with tab completion and shorthand
[rna-star ]
ultrafast universal RNA-seq aligner
[hisat2 ]
graph-based alignment of short nucleotide reads to many genomes
[sambamba ]
tools for working with SAM/BAM data
[samblaster ]
marks duplicates, extracts discordant/split reads
[samtools ]
processing sequence alignments in SAM, BAM and CRAM formats
[salmon ]
wicked-fast transcript quantification from RNA-seq data
[stringtie ]
assemble short RNAseq reads to transcripts
[subread ]
toolkit for processing next-gen sequencing data
[tabix ]
generic indexer for TAB-delimited genome position files
[umis ]
tools for processing UMI RNA-tag data
[varscan ]
variant detection in next-generation sequencing data
[wget ]
retrieves files from the web
[wham-align ]
Wisconsin's High-Throughput Alignment Method
[toil ]
cross-platform workflow engine
[cwltool ]
Common Workflow Language reference implementation
[kallisto ]
near-optimal RNA-Seq quantification
Package not available
Package not available
[libglu1-mesa ]
Mesa OpenGL utility library (GLU)
Package not available
[tophat-recondition ]
post-processor for TopHat unmapped reads
[r-bioc-summarizedexperiment ]
BioConductor assay container
[r-cran-tidyverse ]
Easily Install and Load the 'Tidyverse'
[r-other-wasabi ]
prepare Sailfish and Salmon output for downstream analysis using GNU R
Use this package OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.
Versions, suites, and repositories Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.
Checksums and observation dates For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.
1.2.9-2 / all Observed Sep 1, 2026 to Sep 1, 2026
Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.
Source-reported sha256: b9ba11eac0b246af0bf19720af2f000910c02974bb69f5dc106e7cee9f6c070c
After downloading that exact artifact, compare its bytes with the source-reported expected digest:
printf '%s %s\n' 'b9ba11eac0b246af0bf19720af2f000910c02974bb69f5dc106e7cee9f6c070c' 'bcbio_1.2.9-2_all.deb' | sha256sum --check --strict -A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.
Field source: Debian 12 (Bookworm) contrib amd64 revision bookworm-contrib-amd64:0b0cd0be7afe97b48e1f593e40d471cc673c576408d5513b3eee0bae4b28e52f
1.2.9-2 / all Observed Sep 1, 2026 to Sep 1, 2026
Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.
Source-reported sha256: b9ba11eac0b246af0bf19720af2f000910c02974bb69f5dc106e7cee9f6c070c
After downloading that exact artifact, compare its bytes with the source-reported expected digest:
printf '%s %s\n' 'b9ba11eac0b246af0bf19720af2f000910c02974bb69f5dc106e7cee9f6c070c' 'bcbio_1.2.9-2_all.deb' | sha256sum --check --strict -A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.
Field source: Debian 12 (Bookworm) contrib arm64 revision bookworm-contrib-arm64:2c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e95
Sources and provenance Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.
Authoritative source; repository metadata signature verified, revision bookworm-contrib-amd64:0b0cd0be7afe97b48e1f593e40d471cc673c576408d5513b3eee0bae4b28e52f
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed-object SHA-256 77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint 4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision debian-archive-keyring.gpgSHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy gpgv (GnuPG) 2.4.9
Verification time Sep 1, 2026 Signed Release → package-index hash linkage Path: contrib/binary-amd64/Packages.xz0b0cd0be7afe97b48e1f593e40d471cc673c576408d5513b3eee0bae4b28e52f0b0cd0be7afe97b48e1f593e40d471cc673c576408d5513b3eee0bae4b28e52f
Authoritative source; repository metadata signature verified, revision bookworm-contrib-arm64:2c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e95
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed-object SHA-256 77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint 4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision debian-archive-keyring.gpgSHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy gpgv (GnuPG) 2.4.9
Verification time Sep 1, 2026 Signed Release → package-index hash linkage Path: contrib/binary-arm64/Packages.xz2c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e952c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e95
