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Debian 12 (Bookworm) native package

iva

iterative virus sequence assembler

Packages / Debian 12 (Bookworm) / science / iva

Package: iva (1.0.11+ds-3)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

iterative virus sequence assembler

Other Packages Related to iva:

  • dep: [fastaq]

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  • dep: [python3-networkx]

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  • dep: [python3-packaging]

    core utilities for python3 packages

  • dep: [python3-pysam]

    interface for the SAM/BAM sequence alignment and mapping format (Python 3)

  • dep: [python3] [any]

    interactive high-level object-oriented language (default python3 version)

  • dep: [perl] [any]

    Larry Wall's Practical Extraction and Report Language

  • dep: [kmc]

    count kmers in genomic sequences

  • dep: [mummer]

    Efficient sequence alignment of full genomes

  • dep: [smalt]

    Sequence Mapping and Alignment Tool

  • dep: [samtools]

    processing sequence alignments in SAM, BAM and CRAM formats

  • dep: [python3-numpy]

    Fast array facility to the Python 3 language

  • dep: [default-jre-headless]

    Standard Java or Java compatible Runtime (headless)

  • rec: [r-base-core]

    GNU R core of statistical computation and graphics system

  • rec: [bioperl]

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  • rec: [trimmomatic]

    flexible read trimming tool for Illumina NGS data

Download iva

ArchitecturePackage SizeInstalled SizeFiles
amd648.2 MiB8.6 MiB[list of files]
arm648.2 MiB8.6 MiB[list of files]

Шляхи файлів пакета (65)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/bin/iva
  • /usr/bin/iva_qc
  • /usr/bin/iva_qc_make_db
  • /usr/lib/python3/dist-packages/iva-1.0.9.egg-info/dependency_links.txt
  • /usr/lib/python3/dist-packages/iva-1.0.9.egg-info/PKG-INFO
  • /usr/lib/python3/dist-packages/iva-1.0.9.egg-info/requires.txt
  • /usr/lib/python3/dist-packages/iva-1.0.9.egg-info/top_level.txt
  • /usr/lib/python3/dist-packages/iva/assembly.py
  • /usr/lib/python3/dist-packages/iva/common.py
  • /usr/lib/python3/dist-packages/iva/contig.py
  • /usr/lib/python3/dist-packages/iva/contig_trim.py
  • /usr/lib/python3/dist-packages/iva/edge.py
  • /usr/lib/python3/dist-packages/iva/egg_extract.py
  • /usr/lib/python3/dist-packages/iva/external_progs.py
  • /usr/lib/python3/dist-packages/iva/gage/colsum.pl
  • /usr/lib/python3/dist-packages/iva/gage/getCorrectnessStats.sh
  • /usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class
  • /usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class
  • /usr/lib/python3/dist-packages/iva/gage/GetFastaStats.java
  • /usr/lib/python3/dist-packages/iva/gage/getMummerStats.sh
  • /usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class
  • /usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class
  • /usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.java
  • /usr/lib/python3/dist-packages/iva/gage/SizeFasta.class
  • /usr/lib/python3/dist-packages/iva/gage/SizeFasta.java
  • /usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class
  • /usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.java
  • /usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class
  • /usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class
  • /usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class
  • /usr/lib/python3/dist-packages/iva/gage/Utils.class
  • /usr/lib/python3/dist-packages/iva/gage/Utils.java
  • /usr/lib/python3/dist-packages/iva/graph.py
  • /usr/lib/python3/dist-packages/iva/__init__.py
  • /usr/lib/python3/dist-packages/iva/kcount.py
  • /usr/lib/python3/dist-packages/iva/kmers.py
  • /usr/lib/python3/dist-packages/iva/kraken.py
  • /usr/lib/python3/dist-packages/iva/mapping.py
  • /usr/lib/python3/dist-packages/iva/mummer.py
  • /usr/lib/python3/dist-packages/iva/qc_external.py
  • /usr/lib/python3/dist-packages/iva/qc.py
  • /usr/lib/python3/dist-packages/iva/ratt/embl2gff.pl
  • /usr/lib/python3/dist-packages/iva/ratt/genbank2embl.pl
  • /usr/lib/python3/dist-packages/iva/ratt/main.ratt.pl
  • /usr/lib/python3/dist-packages/iva/ratt/ratt.config
  • /usr/lib/python3/dist-packages/iva/ratt/ratt.config.hiv
  • /usr/lib/python3/dist-packages/iva/ratt/ratt_correction.pm
  • /usr/lib/python3/dist-packages/iva/ratt/start.ratt.sh
  • /usr/lib/python3/dist-packages/iva/read_trim/adapters.fasta
  • /usr/lib/python3/dist-packages/iva/read_trim.py
  • /usr/lib/python3/dist-packages/iva/seed_processor.py
  • /usr/lib/python3/dist-packages/iva/seed.py
  • /usr/lib/python3/dist-packages/iva/test_data_runner.py
  • /usr/lib/python3/dist-packages/iva/test_run_data/hiv_pcr_primers.fa
  • /usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_no_trimmomatic.fasta
  • /usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_with_trimmomatic.fasta
  • /usr/lib/python3/dist-packages/iva/test_run_data/reads_1.fq.gz
  • /usr/lib/python3/dist-packages/iva/test_run_data/reads_2.fq.gz
  • /usr/lib/python3/dist-packages/iva/test_run_data/reference.fasta
  • /usr/share/doc/iva/changelog.Debian.gz
  • /usr/share/doc/iva/changelog.gz
  • /usr/share/doc/iva/copyright
  • /usr/share/man/man1/iva.1.gz
  • /usr/share/man/man1/iva_qc.1.gz
  • /usr/share/man/man1/iva_qc_make_db.1.gz

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 12 (Bookworm) у браузеріЗібрати образ, що містить iva

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.0.11+ds-3bookworm / mainamd64Debian 12 · main · amd648.2 MiB8.6 MiBpool/main/i/iva/iva_1.0.11+ds-3_amd64.deb
1.0.11+ds-3bookworm / mainarm64Debian 12 · main · arm648.2 MiB8.6 MiBpool/main/i/iva/iva_1.0.11+ds-3_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.0.11+ds-3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 4fee119ffb251dc1467267c3f31f14d7d68777dc40cd3a3c3a64a3781bd0ba26

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '4fee119ffb251dc1467267c3f31f14d7d68777dc40cd3a3c3a64a3781bd0ba26' 'iva_1.0.11+ds-3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.0.11+ds-3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 118166d2a4da37fc50295a79cb01061ac9a01ae31de72e5274e651825167129a

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '118166d2a4da37fc50295a79cb01061ac9a01ae31de72e5274e651825167129a' 'iva_1.0.11+ds-3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified