Packages / Debian 12 (Bookworm) / science / pigx-rnaseq
Package: pigx-rnaseq (0.1.0-1.1)
Maintainers:
External Resources:
Homepage: [github.com]
pipeline for checkpointed and distributed RNA-seq analyses
Other Packages Related to pigx-rnaseq:
dep: [fastp]
Ultra-fast all-in-one FASTQ preprocessor
dep: [fastqc]
quality control for high throughput sequence data
dep: [hisat2]
graph-based alignment of short nucleotide reads to many genomes
dep: [rna-star]
ultrafast universal RNA-seq aligner
dep: [libjs-jquery-datatables]
jQuery plug-in that makes nice tables from different data sources
dep: [libjs-jquery-tablesorter]
jQuery flexible client-side table sorting plugin
dep: [megadepth]
computes coverage from BigWig and BAM sequencing files
dep: [multiqc]
output integration for RNA sequencing across tools and samples
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [python3-deeptools]
platform for exploring biological deep-sequencing data
dep: [python3-htseq]
Python3 high-throughput genome sequencing read analysis utilities
dep: [r-bioc-deseq2]
R package for RNA-Seq Differential Expression Analysis
dep: [r-bioc-rtracklayer]
GNU R interface to genome browsers and their annotation tracks
dep: [r-bioc-summarizedexperiment]
BioConductor assay container
dep: [r-bioc-tximport]
transcript-level estimates for biological sequencing
dep: [r-cran-corrplot]
Visualization of a Correlation Matrix
dep: [r-cran-crosstalk]
GNU R inter-widget interactivity for HTML widgets
dep: [r-cran-data.table]
GNU R extension of Data.frame
dep: [r-cran-dt] (>= 0.15+dfsg-2)
GNU R wrapper of the JavaScript library 'DataTables'
dep: [r-cran-ggplot2]
implementation of the Grammar of Graphics
dep: [r-cran-ggpubr]
GNU R ggplot2 based publication ready plots
dep: [r-cran-ggrepel]
auto-position non-overlapping text labels in plots
dep: [r-cran-gprofiler2]
Interface to the 'g:Profiler' Toolset
dep: [r-cran-pheatmap]
GNU R package to create pretty heatmaps
dep: [r-cran-plotly]
create interactive web graphics via 'plotly.js' in GNU R
dep: [r-cran-reshape2]
Flexibly reshape data: a reboot of the reshape package
dep: [r-cran-rjson]
GNU R package for converting between R and JSON objects
dep: [r-cran-rlang]
Functions for Base Types and Core R and 'Tidyverse' Features
dep: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
dep: [r-cran-scales]
Scale functions for visualization
dep: [salmon]
wicked-fast transcript quantification from RNA-seq data
dep: [samtools]
processing sequence alignments in SAM, BAM and CRAM formats
dep: [snakemake]
pythonic workflow management system
dep: [trim-galore]
automate quality and adapter trimming for DNA sequencing
Download pigx-rnaseq
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 60 KiB | 176 KiB | [list of files] |
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Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00