Debian 12 (Bookworm) native package

r-bioc-gsva

Gene Set Variation Analysis for microarray and RNA-seq data

Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-gsva

Package: r-bioc-gsva (1.46.0+ds-1)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

Gene Set Variation Analysis for microarray and RNA-seq data

Other Packages Related to r-bioc-gsva:

dep: [r-base-core] (>= 4.2.2.20221110-1)
GNU R core of statistical computation and graphics system
dep: r-api-4.0
Package not available
dep: r-api-bioc-3.16
Package not available
dep: [r-bioc-s4vectors]
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-iranges]
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-biobase]
base functions for Bioconductor
dep: [r-bioc-summarizedexperiment]
BioConductor assay container
dep: [r-bioc-gseabase]
Gene set enrichment data structures and methods
dep: [r-cran-matrix] (>= 1.5-0)
GNU R package of classes for dense and sparse matrices
dep: [r-bioc-biocparallel]
BioConductor facilities for parallel evaluation
dep: [r-bioc-singlecellexperiment]
S4 Classes for Single Cell Data
dep: [r-bioc-sparsematrixstats]
BioConductor summary statistics for rows and columns of sparse matrices
dep: [r-bioc-delayedarray]
BioConductor delayed operations on array-like objects
dep: [r-bioc-delayedmatrixstats]
Functions on Rows and Columns of 'DelayedMatrix' Objects
dep: [r-bioc-hdf5array]
HDF5 backend for DelayedArray objects
dep: [r-bioc-biocsingular]
Singular Value Decomposition for Bioconductor Packages
dep: [libc6] (>= 2.4)
GNU C Library: Shared libraries

rec: [r-cran-runit]
GNU R package providing unit testing framework
rec: [r-cran-fastmatch]
GNU R package for fast match replacement for repeated look-ups

sug: [r-bioc-biocgenerics]
generic functions for Bioconductor
sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
sug: [r-bioc-limma]
linear models for microarray data
sug: [r-cran-rcolorbrewer]
GNU R package providing suitable color palettes
sug: [r-bioc-org.hs.eg.db]
genome-wide annotation for Human
sug: [r-bioc-genefilter]
methods for filtering genes from microarray experiments
sug: [r-bioc-edger]
Empirical analysis of digital gene expression data in R
sug: [r-cran-shiny]
GNU R web application framework
sug: [r-cran-shinydashboard]
GNU R create dashboards with 'Shiny'
sug: [r-cran-ggplot2]
implementation of the Grammar of Graphics
sug: [r-cran-data.table]
GNU R extension of Data.frame
sug: [r-cran-plotly]
create interactive web graphics via 'plotly.js' in GNU R
sug: [r-cran-future]
R package: A Future API for R
sug: [r-cran-promises]
GNU R abstractions for promise-based asynchronous programming
sug: [r-cran-shinyjs]
Easily Improve the User Experience of Your Shiny Apps in Seconds

Download r-bioc-gsva

Architecture	Package Size	Installed Size	Files
amd64	781 KiB	912 KiB	[list of files]
arm64	787 KiB	964 KiB	[list of files]

Package file paths (49)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/GSVA/CITATION
/usr/lib/R/site-library/GSVA/DESCRIPTION
/usr/lib/R/site-library/GSVA/doc/GSVA.R
/usr/lib/R/site-library/GSVA/doc/GSVA.Rmd
/usr/lib/R/site-library/GSVA/doc/index.html
/usr/lib/R/site-library/GSVA/extdata/cache4vignette_leukemia_es.RData
/usr/lib/R/site-library/GSVA/help/aliases.rds
/usr/lib/R/site-library/GSVA/help/AnIndex
/usr/lib/R/site-library/GSVA/help/GSVA.rdb
/usr/lib/R/site-library/GSVA/help/GSVA.rdx
/usr/lib/R/site-library/GSVA/help/paths.rds
/usr/lib/R/site-library/GSVA/html/00Index.html
/usr/lib/R/site-library/GSVA/html/R.css
/usr/lib/R/site-library/GSVA/INDEX
/usr/lib/R/site-library/GSVA/libs/GSVA.so
/usr/lib/R/site-library/GSVA/Meta/features.rds
/usr/lib/R/site-library/GSVA/Meta/hsearch.rds
/usr/lib/R/site-library/GSVA/Meta/links.rds
/usr/lib/R/site-library/GSVA/Meta/nsInfo.rds
/usr/lib/R/site-library/GSVA/Meta/package.rds
/usr/lib/R/site-library/GSVA/Meta/Rd.rds
/usr/lib/R/site-library/GSVA/Meta/vignette.rds
/usr/lib/R/site-library/GSVA/NAMESPACE
/usr/lib/R/site-library/GSVA/NEWS
/usr/lib/R/site-library/GSVA/R/GSVA
/usr/lib/R/site-library/GSVA/R/GSVA.rdb
/usr/lib/R/site-library/GSVA/R/GSVA.rdx
/usr/lib/R/site-library/GSVA/shinyApp/argumentsDataModule.R
/usr/lib/R/site-library/GSVA/shinyApp/closeModule.R
/usr/lib/R/site-library/GSVA/shinyApp/downloadModule.R
/usr/lib/R/site-library/GSVA/shinyApp/geneSetsModule.R
/usr/lib/R/site-library/GSVA/shinyApp/global.R
/usr/lib/R/site-library/GSVA/shinyApp/matrixModule.R
/usr/lib/R/site-library/GSVA/shinyApp/modalGSVAModule.R
/usr/lib/R/site-library/GSVA/shinyApp/plot1_Module.R
/usr/lib/R/site-library/GSVA/shinyApp/plot2_Module.R
/usr/lib/R/site-library/GSVA/shinyApp/plot3_Module.R
/usr/lib/R/site-library/GSVA/shinyApp/server.R
/usr/lib/R/site-library/GSVA/shinyApp/ui.R
/usr/lib/R/site-library/GSVA/shinyApp/www/GSVA.png
/usr/lib/R/site-library/GSVA/shinyApp/www/style.css
/usr/lib/R/site-library/GSVA/unitTests/test_delayed.R
/usr/lib/R/site-library/GSVA/unitTests/test_inputdatacontainers.R
/usr/lib/R/site-library/GSVA/unitTests/test_sparse.R
/usr/lib/R/site-library/GSVA/unitTests/test_ssgsea.R
/usr/share/doc/r-bioc-gsva/changelog.Debian.gz
/usr/share/doc/r-bioc-gsva/copyright
/usr/share/doc/r-bioc-gsva/run-unit-test
/usr/share/doc/r-bioc-gsva/tests/runTests.R

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browser Build an image that includes r-bioc-gsva

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.46.0+ds-1	bookworm / main	amd64	Debian 12 · main · amd64	781 KiB	912 KiB	pool/main/r/r-bioc-gsva/r-bioc-gsva_1.46.0+ds-1_amd64.deb
1.46.0+ds-1	bookworm / main	arm64	Debian 12 · main · arm64	787 KiB	964 KiB	pool/main/r/r-bioc-gsva/r-bioc-gsva_1.46.0+ds-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.46.0+ds-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 96b236e8a4a9ee8b20f7d5812f36eb1a39dd4f4115ebc910a0da2fb5a3539143

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '96b236e8a4a9ee8b20f7d5812f36eb1a39dd4f4115ebc910a0da2fb5a3539143' 'r-bioc-gsva_1.46.0+ds-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.46.0+ds-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e9d962ba19a4d692e312f1bdccf9f963e1c0d3b5f72fed69f8f9657320b6c56d

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'e9d962ba19a4d692e312f1bdccf9f963e1c0d3b5f72fed69f8f9657320b6c56d' 'r-bioc-gsva_1.46.0+ds-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified