Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-scater
Package: r-bioc-scater (1.26.1+ds-1)
Maintainers:
External Resources:
Homepage: [bioconductor.org]
Single-Cell Analysis Toolkit for Gene Expression Data in R
Other Packages Related to r-bioc-scater:
dep: [r-base-core] (>= 4.2.2.20221110-1)
GNU R core of statistical computation and graphics system
dep: r-api-4.0
Package not available
dep: r-api-bioc-3.16
Package not available
dep: [r-bioc-singlecellexperiment]
S4 Classes for Single Cell Data
dep: [r-bioc-scuttle]
BioConductor single-cell RNA-Seq analysis utilities
dep: [r-cran-ggplot2]
implementation of the Grammar of Graphics
dep: [r-cran-gridextra]
GNU R package with extensions for the grid package
dep: [r-cran-matrix]
GNU R package of classes for dense and sparse matrices
dep: [r-bioc-biocgenerics]
generic functions for Bioconductor
dep: [r-bioc-s4vectors]
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-summarizedexperiment]
BioConductor assay container
dep: [r-bioc-delayedarray]
BioConductor delayed operations on array-like objects
dep: [r-bioc-delayedmatrixstats]
Functions on Rows and Columns of 'DelayedMatrix' Objects
dep: [r-bioc-beachmat]
I/O for several formats storing matrix data
dep: [r-bioc-biocneighbors]
Nearest Neighbor Detection for Bioconductor Packages
dep: [r-bioc-biocsingular]
Singular Value Decomposition for Bioconductor Packages
dep: [r-bioc-biocparallel]
BioConductor facilities for parallel evaluation
dep: [r-cran-rlang]
Functions for Base Types and Core R and 'Tidyverse' Features
dep: [r-cran-ggbeeswarm]
GNU R categorical scatter (violin point) plots
dep: [r-cran-viridis]
GNU R package for color maps from matplotlib
dep: [r-cran-rtsne]
GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
dep: [r-cran-rcolorbrewer]
GNU R package providing suitable color palettes
dep: [r-cran-rcppml]
GNU R Rcpp Machine Learning Library
dep: [r-cran-uwot]
GNU R uniform manifold approximation and projection (UMAP)
dep: [r-cran-pheatmap]
GNU R package to create pretty heatmaps
dep: [r-cran-ggrastr]
Bioconductor rasterize layers for 'ggplot2'
dep: [r-cran-ggrepel]
auto-position non-overlapping text labels in plots
sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents
sug: [r-cran-cowplot]
GNU R streamlined plot theme and plot annotations for 'ggplot2'
sug: [r-bioc-biomart]
GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-bioc-scrnaseq]
Collection of Public Single-Cell RNA-Seq Datasets
sug: [r-cran-robustbase]
GNU R package providing basic robust statistics
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
sug: [r-cran-testthat]
GNU R testsuite
sug: [r-bioc-biobase]
base functions for Bioconductor
Download r-bioc-scater
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 509 KiB | 632 KiB | [list of files] |
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Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00