r-bioc-scater

dep: r-api-4.0

Package not available

dep: r-api-bioc-3.20

Package not available

dep: [r-bioc-singlecellexperiment]

S4 Classes for Single Cell Data

dep: [r-bioc-scuttle]

BioConductor single-cell RNA-Seq analysis utilities

dep: [r-cran-ggplot2]

implementation of the Grammar of Graphics

dep: [r-cran-matrix]

GNU R package of classes for dense and sparse matrices

dep: [r-bioc-biocgenerics]

generic functions for Bioconductor

dep: [r-bioc-s4vectors]

BioConductor S4 implementation of vectors and lists

dep: [r-bioc-summarizedexperiment]

BioConductor assay container

dep: [r-bioc-matrixgenerics]

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

dep: [r-bioc-sparsearray]

efficient in-memory representation of multidimensional sparse arrays

dep: [r-bioc-delayedarray]

BioConductor delayed operations on array-like objects

dep: [r-bioc-beachmat]

I/O for several formats storing matrix data

dep: [r-bioc-biocneighbors]

Nearest Neighbor Detection for Bioconductor Packages

dep: [r-bioc-biocsingular]

Singular Value Decomposition for Bioconductor Packages

dep: [r-bioc-biocparallel]

BioConductor facilities for parallel evaluation

dep: [r-cran-rlang]

Functions for Base Types and Core R and 'Tidyverse' Features

dep: [r-cran-ggbeeswarm]

GNU R categorical scatter (violin point) plots

dep: [r-cran-viridis]

GNU R package for color maps from matplotlib

dep: [r-cran-rtsne]

GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

dep: [r-cran-rcolorbrewer]

GNU R package providing suitable color palettes

dep: [r-cran-rcppml]

GNU R Rcpp Machine Learning Library

dep: [r-cran-uwot]

GNU R uniform manifold approximation and projection (UMAP)

dep: [r-cran-pheatmap]

GNU R package to create pretty heatmaps

dep: [r-cran-ggrepel]

auto-position non-overlapping text labels in plots

dep: [r-cran-ggrastr]

Bioconductor rasterize layers for 'ggplot2'

sug: [r-bioc-biocstyle]

standard styles for vignettes and other Bioconductor documents

sug: [r-bioc-delayedmatrixstats]

Functions on Rows and Columns of 'DelayedMatrix' Objects

sug: [r-bioc-densvis]

density-preserving data visualization via non-linear dimensionality reduction

sug: [r-cran-cowplot]

GNU R streamlined plot theme and plot annotations for 'ggplot2'

sug: [r-bioc-biomart]

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

sug: [r-cran-knitr]

GNU R package for dynamic report generation using Literate Programming

sug: [r-bioc-scrnaseq]

Collection of Public Single-Cell RNA-Seq Datasets

sug: [r-cran-robustbase]

GNU R package providing basic robust statistics

sug: [r-cran-rmarkdown]

convert R markdown documents into a variety of formats

sug: [r-cran-testthat]

GNU R testsuite

sug: [r-bioc-biobase]

base functions for Bioconductor

sug: [r-cran-scattermore]

GNU R scatterplots with more points