r-cran-seurat

dep: [r-base-core] (>= 4.2.2.20221110-1)

GNU R core of statistical computation and graphics system

dep: r-api-4.0

Package not available

dep: [r-cran-cluster]

GNU R package for cluster analysis by Rousseeuw et al

dep: [r-cran-cowplot]

GNU R streamlined plot theme and plot annotations for 'ggplot2'

dep: [r-cran-fitdistrplus]

support fit of parametric distribution

dep: [r-cran-future]

R package: A Future API for R

dep: [r-cran-future.apply]

apply function to elements in parallel using futures

dep: [r-cran-ggplot2] (>= 3.3.0)

implementation of the Grammar of Graphics

dep: [r-cran-ggrepel]

auto-position non-overlapping text labels in plots

dep: [r-cran-ggridges]

Ridgeline Plots in 'ggplot2'

dep: [r-cran-httr]

GNU R tools for working with URLs and HTTP

dep: [r-cran-ica]

Independent Component Analysis

dep: [r-cran-igraph]

GNU R network analysis and visualization

dep: [r-cran-irlba]

GNU R fast truncated SVD, PCA and symmetric eigendecomposition

dep: [r-cran-jsonlite]

Robust, High Performance JSON Parser and Generator for R

dep: [r-cran-kernsmooth]

GNU R package for kernel smoothing and density estimation

dep: [r-cran-leiden] (>= 0.3.1)

GNU R implementation of Leiden clustering algorithm

dep: [r-cran-lmtest]

GNU R package for diagnostic checking in linear models

dep: [r-cran-mass]

GNU R package of Venables and Ripley's MASS

dep: [r-cran-matrix] (>= 1.5-0)

GNU R package of classes for dense and sparse matrices

dep: [r-cran-matrixstats]

GNU R methods that apply to rows and columns of a matrix

dep: [r-cran-miniui]

Shiny UI Widgets for Small Screens

dep: [r-cran-patchwork]

GNU R the composer of plots

dep: [r-cran-pbapply]

GNU R package providing progress bars for vectorized R functions

dep: [r-cran-plotly] (>= 4.9.0)

create interactive web graphics via 'plotly.js' in GNU R

dep: [r-cran-png]

GNU R package to read and write PNG images

dep: [r-cran-progressr]

GNU R inclusive, unifying API for progress updates

dep: [r-cran-rann]

Fast Nearest Neighbour Search Using L2 Metric

dep: [r-cran-rcolorbrewer]

GNU R package providing suitable color palettes

dep: [r-cran-rcpp] (>= 1.0.7)

GNU R package for Seamless R and C++ Integration

dep: [r-cran-rcppannoy] (>= 0.0.18)

Rcpp bindings for Annoy (approximate nearest neighbors)

dep: [r-cran-reticulate]

R interface to Python modules, classes, and functions

dep: [r-cran-rlang]

Functions for Base Types and Core R and 'Tidyverse' Features

dep: [r-cran-rocr]

GNU R package to prepare and display ROC curves

dep: [r-cran-rtsne]

GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

dep: [r-cran-scales]

Scale functions for visualization

dep: [r-cran-scattermore] (>= 0.7)

GNU R scatterplots with more points

dep: [r-cran-sctransform] (>= 0.3.5)

Variance Stabilizing Transformations for Single Cell UMI Data

dep: [r-cran-seuratobject] (>= 4.1.3)

GNU R data structures for single cell data

dep: [r-cran-shiny]

GNU R web application framework

dep: [r-cran-spatstat.explore]

GNU R exploratory data analysis for the 'spatstat' family

dep: [r-cran-spatstat.geom]

GNU R geometrical functionality of the 'spatstat' package

dep: [r-cran-tibble]

GNU R Simple Data Frames

dep: [r-cran-uwot] (>= 0.1.14)

GNU R uniform manifold approximation and projection (UMAP)

dep: [r-cran-rcppeigen]

GNU R package for Eigen templated linear algebra

dep: [r-cran-rcppprogress]

interruptible progress bar for C++ in GNU R packages

dep: [libc6] (>= 2.32)

GNU C Library: Shared libraries

dep: [libgcc-s1] (>= 3.0)

GCC support library

dep: [libstdc++6] (>= 11)

GNU Standard C++ Library v3

rec: [r-cran-testthat]

GNU R testsuite

rec: [r-cran-hdf5r]

GNU R interface to the 'HDF5' binary data format

sug: [r-cran-ape]

GNU R package for Analyses of Phylogenetics and Evolution

sug: [r-cran-rsvd]

Randomized Singular Value Decomposition

sug: [r-bioc-s4vectors]

BioConductor S4 implementation of vectors and lists

sug: [r-bioc-summarizedexperiment]

BioConductor assay container

sug: [r-bioc-singlecellexperiment]

S4 Classes for Single Cell Data

sug: [r-bioc-deseq2]

R package for RNA-Seq Differential Expression Analysis

sug: [r-bioc-biocgenerics]

generic functions for Bioconductor

sug: [r-bioc-genomicranges]

BioConductor representation and manipulation of genomic intervals

sug: [r-bioc-genomeinfodb]

BioConductor utilities for manipulating chromosome identifiers

sug: [r-bioc-iranges]

GNU R low-level containers for storing sets of integer ranges

sug: [r-bioc-rtracklayer]

GNU R interface to genome browsers and their annotation tracks

sug: [r-bioc-monocle]

clustering, differential expression, and trajectory analysis for RNA-Seq

sug: [r-bioc-biobase]

base functions for Bioconductor

sug: [r-cran-vgam]

GNU R package for estimating vector generalized additive models

sug: [r-bioc-limma]

linear models for microarray data

sug: [r-cran-metap]

Meta-Analysis of Significance Values

sug: [r-cran-mixtools]

GNU R tools for analyzing finite mixture models

sug: [r-cran-ggrastr]

Bioconductor rasterize layers for 'ggplot2'

sug: [r-cran-data.table]

GNU R extension of Data.frame

sug: [r-cran-r.utils]

GNU R various programming utilities