Debian 12 (Bookworm) native package

sift

predicts if a substitution in a protein has a phenotypic effect

Packages / Debian 12 (Bookworm) / non-free/science / sift

[Source: sift]

Package: sift (4.0.3b-6+b1)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [sift.bii.a-star.edu.sg]

predicts if a substitution in a protein has a phenotypic effect

Other Packages Related to sift:

dep: [libblimps3] (>= 3.9+ds)
blocks database improved searcher library
dep: [libc6] (>= 2.29)
GNU C Library: Shared libraries
dep: [blimps-utils]
blocks database improved searcher
dep: [csh]
Shell with C-like syntax

Download sift

Architecture	Package Size	Installed Size	Files
amd64	248 KiB	1.0 MiB	[list of files]

Package file paths (73)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/info_on_seqs
/usr/bin/map_coords_to_bin.pl
/usr/bin/SIFT_exome_nssnvs.pl
/usr/bin/sift_feed_to_chr_coords_batch.pl
/usr/bin/sift_for_submitting_fasta_seq.csh
/usr/bin/SIFT_for_submitting_fasta_seq.csh
/usr/bin/snv_db_engine.pl
/usr/lib/sift/bin/choose_seqs_via_psiblastseedmedian
/usr/lib/sift/bin/Classify_SNPs_Indels.pl
/usr/lib/sift/bin/clump_output_alignedseq
/usr/lib/sift/bin/consensus_to_seq
/usr/lib/sift/bin/detect_indel.pl
/usr/lib/sift/bin/detect_repeat.pl
/usr/lib/sift/bin/DNA_PROT_SUBROUTINES.pl
/usr/lib/sift/bin/get_sequences.pl
/usr/lib/sift/bin/indelfile_to_gff.pl
/usr/lib/sift/bin/info_on_seqs
/usr/lib/sift/bin/IntersectLocations.sh
/usr/lib/sift/bin/map_coords_to_bin_indels.pl
/usr/lib/sift/bin/map_coords_to_bin.pl
/usr/lib/sift/bin/model_transcript.pl
/usr/lib/sift/bin/perlscripts/get_BLINK_seq.pl
/usr/lib/sift/bin/perlscripts/separate_query_from_rest_of_seqs.pl
/usr/lib/sift/bin/psiblast_res_to_fasta_dbpairwise
/usr/lib/sift/bin/reformat_chrfile.pl
/usr/lib/sift/bin/seqs_chosen_via_median_info.csh
/usr/lib/sift/bin/seqs_from_psiblast_res
/usr/lib/sift/bin/seqs_to_matrixweb
/usr/lib/sift/bin/SIFT_exome_indels.pl
/usr/lib/sift/bin/SIFT_exome_nssnvs.pl
/usr/lib/sift/bin/sift_feed_to_chr_coords_batch.pl
/usr/lib/sift/bin/SIFT_for_submitting_fasta_seq.csh
/usr/lib/sift/bin/SIFT_for_submitting_NCBI_gi_id.csh
/usr/lib/sift/bin/SIFT_intersect_cds.pl
/usr/lib/sift/bin/SIFT_subroutines.pm
/usr/lib/sift/bin/SNPClassifier/Classify_SNPs.pl
/usr/lib/sift/bin/SNPClassifier/Extract_Coding_Info.pl
/usr/lib/sift/bin/snv_db_engine.pl
/usr/share/doc/sift/changelog.Debian.amd64.gz
/usr/share/doc/sift/changelog.Debian.gz
/usr/share/doc/sift/copyright
/usr/share/doc/sift/examples/lacI.alignedfasta
/usr/share/doc/sift/examples/lacI.fasta
/usr/share/doc/sift/examples/lacI.fasta.query.out.gz
/usr/share/doc/sift/examples/lacI.SIFTprediction
/usr/share/doc/sift/examples/lacI.subst
/usr/share/doc/sift/README_4.0.3.gz
/usr/share/doc/sift/README.Debian
/usr/share/doc/sift/README.gz
/usr/share/doc/sift/VERSION_UPDATE
/usr/share/man/man1/info_on_seqs.1.gz
/usr/share/man/man1/sift_for_submitting_fasta_seq.csh.1.gz
/usr/share/man/man1/SIFT_for_submitting_fasta_seq.csh.1.gz
/usr/share/sift/blimps/docs/blosum62.bla.new
/usr/share/sift/blimps/docs/coduse.csh
/usr/share/sift/blimps/docs/config.doc
/usr/share/sift/blimps/docs/default.amino.frq
/usr/share/sift/blimps/docs/default.codon.frq
/usr/share/sift/blimps/docs/default.codon.use
/usr/share/sift/blimps/docs/default.consensus.iij
/usr/share/sift/blimps/docs/default.diri
/usr/share/sift/blimps/docs/default.embed.iij
/usr/share/sift/blimps/docs/default.embed.mat
/usr/share/sift/blimps/docs/default.embed.qij
/usr/share/sift/blimps/docs/default.iij
/usr/share/sift/blimps/docs/default.mat
/usr/share/sift/blimps/docs/default.qij
/usr/share/sift/blimps/docs/default.rank
/usr/share/sift/blimps/docs/default.sij
/usr/share/sift/blimps/docs/identity.frq
/usr/share/sift/blimps/docs/skiplist.doc
/usr/share/sift/blimps/docs/sl-functions.doc
/usr/share/sift/IntersectFeatures.jar

Field source: Debian 12 (Bookworm) non-free amd64 revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 12 (Bookworm) in the browser Build an image that includes sift

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
4.0.3b-6+b1	bookworm / non-free	amd64	Debian 12 · non-free · amd64	248 KiB	1.0 MiB	pool/non-free/s/sift/sift_4.0.3b-6+b1_amd64.deb

Field source: Debian 12 (Bookworm) non-free amd64 revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

4.0.3b-6+b1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: bed87a4a38845c28023f750da52fc9f90d245f7a8fdc61bbd6da973fedae1b45

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'bed87a4a38845c28023f750da52fc9f90d245f7a8fdc61bbd6da973fedae1b45' 'sift_4.0.3b-6+b1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) non-free amd64 revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) non-free amd64 revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) non-free amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-non-free-amd64:8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: non-free/binary-amd64/Packages.xz
Expected SHA-256: 8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d
Observed SHA-256: 8aacd1cb81b47407a43a8fa6a59b8de3da5e0336f612f7e9245d4ea380b8a49d
Result: match verified