Debian 13 (Trixie) native package

python3-ost

Open-Source Computational Structural Biology Framework - Python 3 package

Packages / Debian 13 (Trixie) / python / python3-ost

[Source: openstructure]

Package: python3-ost (2.9.3-2)

Maintainers:

Debichem Team

External Resources:

Homepage: [www.openstructure.org]

Similar packages:

[libost-base2.9]
Open-Source Computational Structural Biology Framework
[libost-base-dev]
Open-Source Computational Structural Biology Framework
[libost-bindings2.9]
Open-Source Computational Structural Biology Framework
[libost-bindings-dev]
Open-Source Computational Structural Biology Framework
[libost-conop2.9]
Open-Source Computational Structural Biology Framework
[libost-conop-dev]
Open-Source Computational Structural Biology Framework
[libost-db2.9]
Open-Source Computational Structural Biology Framework
[libost-db-dev]
Open-Source Computational Structural Biology Framework
[libost-geom2.9]
Open-Source Computational Structural Biology Framework
[libost-geom-dev]
Open-Source Computational Structural Biology Framework
[libost-gfx2.9]
Open-Source Computational Structural Biology Framework
[libost-gfx-dev]
Open-Source Computational Structural Biology Framework
[libost-gui2.9]
Open-Source Computational Structural Biology Framework
[libost-gui-dev]
Open-Source Computational Structural Biology Framework
[libost-img2.9]
Open-Source Computational Structural Biology Framework
[libost-img-alg2.9]
Open-Source Computational Structural Biology Framework
[libost-img-alg-dev]
Open-Source Computational Structural Biology Framework
[libost-img-dev]
Open-Source Computational Structural Biology Framework
[libost-info2.9]
Open-Source Computational Structural Biology Framework
[libost-info-dev]
Open-Source Computational Structural Biology Framework
[libost-io2.9]
Open-Source Computational Structural Biology Framework
[libost-io-dev]
Open-Source Computational Structural Biology Framework
[libost-mol2.9]
Open-Source Computational Structural Biology Framework
[libost-mol-alg2.9]
Open-Source Computational Structural Biology Framework
[libost-mol-alg-dev]
Open-Source Computational Structural Biology Framework
[libost-mol-dev]
Open-Source Computational Structural Biology Framework
[libost-mol-mm2.9]
Open-Source Computational Structural Biology Framework
[libost-mol-mm-dev]
Open-Source Computational Structural Biology Framework
[libost-seq2.9]
Open-Source Computational Structural Biology Framework
[libost-seq-alg2.9]
Open-Source Computational Structural Biology Framework
[libost-seq-alg-dev]
Open-Source Computational Structural Biology Framework
[libost-seq-dev]
Open-Source Computational Structural Biology Framework

Open-Source Computational Structural Biology Framework - Python 3 package

Other Packages Related to python3-ost:

dep: [python3-matplotlib]
Python based plotting system in a style similar to Matlab
dep: [python3-numpy]
Python library for numerical computations (Python 3)
dep: [python3-pil]
Python Imaging Library (Python3)
dep: [python3-pyqt5]
Python 3 bindings for Qt5
dep: [python3] (<< 3.14)
interactive high-level object-oriented language (default python3 version)
dep: [python3] (>= 3.13~)
interactive high-level object-oriented language (default python3 version)
dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [libboost-filesystem1.83.0] (>= 1.83.0)
filesystem operations (portable paths, iteration over directories, etc) in C++
dep: [libboost-python1.83.0] (>= 1.83.0)
Boost.Python Library
dep: libboost-python1.83.0-py313
Package not available
dep: [libc6] (>= 2.32)
GNU C Library: Shared libraries
dep: [libgcc-s1] (>= 3.0)
GCC support library
dep: [libopenmm8.1] (>= 8.1.2+dfsg)
High-performance molecular simulation library
dep: [libost-base2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-bindings2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-conop2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-db2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-geom2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-gfx2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-gui2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-img-alg2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-img2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-info2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-io2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-mol-alg2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-mol-mm2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-mol2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-seq-alg2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libost-seq2.9] (>= 2.9.3)
Open-Source Computational Structural Biology Framework
dep: [libpython3.13] (>= 3.13.0~rc3)
Shared Python runtime library (version 3.13)
dep: [libqt5core5t64] (>= 5.15.1)
Qt 5 core module
dep: [libqt5gui5t64] (>= 5.2.0)
Qt 5 GUI module
dep: [libqt5gui5-gles] (>= 5.2.0)
Qt 5 GUI module — OpenGL ES variant
dep: [libqt5widgets5t64] (>= 5.0.2)
Qt 5 widgets module
dep: [libstdc++6] (>= 14)
GNU Standard C++ Library v3

Download python3-ost

Architecture	Package Size	Installed Size	Files
amd64	3.8 MiB	29 MiB	[list of files]

Package file paths (138)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/python3/dist-packages/ost/bindings/blast.py
/usr/lib/python3/dist-packages/ost/bindings/cadscore.py
/usr/lib/python3/dist-packages/ost/bindings/clustalw.py
/usr/lib/python3/dist-packages/ost/bindings/dockq.py
/usr/lib/python3/dist-packages/ost/bindings/dssp.py
/usr/lib/python3/dist-packages/ost/bindings/hbplus.py
/usr/lib/python3/dist-packages/ost/bindings/hhblits2.py
/usr/lib/python3/dist-packages/ost/bindings/hhblits3.py
/usr/lib/python3/dist-packages/ost/bindings/hhblits.py
/usr/lib/python3/dist-packages/ost/bindings/ialign.py
/usr/lib/python3/dist-packages/ost/bindings/__init__.py
/usr/lib/python3/dist-packages/ost/bindings/kclust.py
/usr/lib/python3/dist-packages/ost/bindings/lga.py
/usr/lib/python3/dist-packages/ost/bindings/mmseqs2.py
/usr/lib/python3/dist-packages/ost/bindings/msms.py
/usr/lib/python3/dist-packages/ost/bindings/naccess.py
/usr/lib/python3/dist-packages/ost/bindings/_ost_bindings.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/bindings/tmtools.py
/usr/lib/python3/dist-packages/ost/bindings/utils.py
/usr/lib/python3/dist-packages/ost/conop/cleanup.py
/usr/lib/python3/dist-packages/ost/conop/__init__.py
/usr/lib/python3/dist-packages/ost/conop/_ost_conop.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/db/__init__.py
/usr/lib/python3/dist-packages/ost/db/_ost_db.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/dng_startup.py
/usr/lib/python3/dist-packages/ost/geom/__init__.py
/usr/lib/python3/dist-packages/ost/geom/_ost_geom.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/gfx/__init__.py
/usr/lib/python3/dist-packages/ost/gfx/_ost_gfx.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/gfx/py_gfx_obj.py
/usr/lib/python3/dist-packages/ost/gui/dng/__init__.py
/usr/lib/python3/dist-packages/ost/gui/dng/init.py
/usr/lib/python3/dist-packages/ost/gui/dng/menu.py
/usr/lib/python3/dist-packages/ost/gui/dng/superpositiondialog.py
/usr/lib/python3/dist-packages/ost/gui/dng/termuse.py
/usr/lib/python3/dist-packages/ost/gui/gosty_startup.py
/usr/lib/python3/dist-packages/ost/gui/helpwidget.py
/usr/lib/python3/dist-packages/ost/gui/init_context_menu.py
/usr/lib/python3/dist-packages/ost/gui/init_menubar.py
/usr/lib/python3/dist-packages/ost/gui/__init__.py
/usr/lib/python3/dist-packages/ost/gui/init_spacenav.py
/usr/lib/python3/dist-packages/ost/gui/init_splash.py
/usr/lib/python3/dist-packages/ost/gui/_ost_gui.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/gui/scene/color_options_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/color_select_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/combo_options_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/cpk_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/custom_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/gradient_editor_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/gradient_info_handler.py
/usr/lib/python3/dist-packages/ost/gui/scene/gradient_list_model.py
/usr/lib/python3/dist-packages/ost/gui/scene/gradient_preset_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/hsc_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/immutable_gradient_info_handler.py
/usr/lib/python3/dist-packages/ost/gui/scene/immutable_preset_info_handler.py
/usr/lib/python3/dist-packages/ost/gui/scene/init_inspector.py
/usr/lib/python3/dist-packages/ost/gui/scene/__init__.py
/usr/lib/python3/dist-packages/ost/gui/scene/inspector_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/line_trace_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/map_level_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/preset_editor_list_model.py
/usr/lib/python3/dist-packages/ost/gui/scene/preset_editor_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/preset_info_handler.py
/usr/lib/python3/dist-packages/ost/gui/scene/preset_list_model.py
/usr/lib/python3/dist-packages/ost/gui/scene/preset.py
/usr/lib/python3/dist-packages/ost/gui/scene/preset_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/query_editor.py
/usr/lib/python3/dist-packages/ost/gui/scene/remote.py
/usr/lib/python3/dist-packages/ost/gui/scene/render_mode_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/render_op.py
/usr/lib/python3/dist-packages/ost/gui/scene/render_options_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/scene_observer_impl.py
/usr/lib/python3/dist-packages/ost/gui/scene/scene_selection_helper.py
/usr/lib/python3/dist-packages/ost/gui/scene/simple_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/sline_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/toolbar_options_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/trace_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/tube_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/uniform_color_widget.py
/usr/lib/python3/dist-packages/ost/gui/scene/visibility_op.py
/usr/lib/python3/dist-packages/ost/gui/scene/wireframe_widget.py
/usr/lib/python3/dist-packages/ost/gui/table.py
/usr/lib/python3/dist-packages/ost/gui/trajectory_viewer.py
/usr/lib/python3/dist-packages/ost/img/alg/__init__.py
/usr/lib/python3/dist-packages/ost/img/alg/_ost_img_alg.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/img/__init__.py
/usr/lib/python3/dist-packages/ost/img/_ost_img.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/info/__init__.py
/usr/lib/python3/dist-packages/ost/info/_ost_info.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/__init__.py
/usr/lib/python3/dist-packages/ost/io/__init__.py
/usr/lib/python3/dist-packages/ost/io/_ost_io.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/io/remote.py
/usr/lib/python3/dist-packages/ost/io/repository.py
/usr/lib/python3/dist-packages/ost/mol/alg/bb_lddt.py
/usr/lib/python3/dist-packages/ost/mol/alg/chain_mapping.py
/usr/lib/python3/dist-packages/ost/mol/alg/contact_score.py
/usr/lib/python3/dist-packages/ost/mol/alg/dockq.py
/usr/lib/python3/dist-packages/ost/mol/alg/hbond.py
/usr/lib/python3/dist-packages/ost/mol/alg/helix_kinks.py
/usr/lib/python3/dist-packages/ost/mol/alg/__init__.py
/usr/lib/python3/dist-packages/ost/mol/alg/lddt.py
/usr/lib/python3/dist-packages/ost/mol/alg/ligand_scoring_base.py
/usr/lib/python3/dist-packages/ost/mol/alg/ligand_scoring_lddtpli.py
/usr/lib/python3/dist-packages/ost/mol/alg/ligand_scoring.py
/usr/lib/python3/dist-packages/ost/mol/alg/ligand_scoring_scrmsd.py
/usr/lib/python3/dist-packages/ost/mol/alg/_ost_mol_alg.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/mol/alg/qsscore.py
/usr/lib/python3/dist-packages/ost/mol/alg/qsscoring.py
/usr/lib/python3/dist-packages/ost/mol/alg/scoring.py
/usr/lib/python3/dist-packages/ost/mol/alg/stereochemistry.py
/usr/lib/python3/dist-packages/ost/mol/alg/structure_analysis.py
/usr/lib/python3/dist-packages/ost/mol/alg/superpose.py
/usr/lib/python3/dist-packages/ost/mol/alg/trajectory_analysis.py
/usr/lib/python3/dist-packages/ost/mol/alg/views.py
/usr/lib/python3/dist-packages/ost/mol/__init__.py
/usr/lib/python3/dist-packages/ost/mol/mm/antechamber.py
/usr/lib/python3/dist-packages/ost/mol/mm/__init__.py
/usr/lib/python3/dist-packages/ost/mol/mm/_ost_mol_mm.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/mol/_ost_mol.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/_ost_base.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/ost_startup.py
/usr/lib/python3/dist-packages/ost/seq/alg/aaindex.py
/usr/lib/python3/dist-packages/ost/seq/alg/__init__.py
/usr/lib/python3/dist-packages/ost/seq/alg/mat.py
/usr/lib/python3/dist-packages/ost/seq/alg/_ost_seq_alg.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/seq/alg/renumber.py
/usr/lib/python3/dist-packages/ost/seq/__init__.py
/usr/lib/python3/dist-packages/ost/seq/_ost_seq.cpython-313-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/ost/settings.py
/usr/lib/python3/dist-packages/ost/stutil.py
/usr/lib/python3/dist-packages/ost/table.py
/usr/lib/python3/dist-packages/ost/table_selector.py
/usr/lib/python3/dist-packages/ost/testutils.py
/usr/lib/python3/dist-packages/ost/xmlrunner.py
/usr/share/doc/python3-ost/changelog.Debian.gz
/usr/share/doc/python3-ost/changelog.gz
/usr/share/doc/python3-ost/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

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OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.9.3-2	trixie / main	amd64	Debian 13 · main · amd64	3.8 MiB	29 MiB	pool/main/o/openstructure/python3-ost_2.9.3-2_amd64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2.9.3-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: f728b0c223f4d93addab3a683aae530e2c1547c62e612c5d50a0c743e0354b87

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'f728b0c223f4d93addab3a683aae530e2c1547c62e612c5d50a0c743e0354b87' 'python3-ost_2.9.3-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified