Linux workstation

Debian 13 (Trixie) native package

r-bioc-grohmm

GRO-seq Analysis Pipeline

Packages / Debian 13 (Trixie) / gnu-r / r-bioc-grohmm

Package: r-bioc-grohmm (1.40.3-3)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

GRO-seq Analysis Pipeline

Other Packages Related to r-bioc-grohmm:

  • dep: r-api-4.0

    Package not available

  • dep: r-api-bioc-3.20

    Package not available

  • dep: [r-cran-mass]

    GNU R package of Venables and Ripley's MASS

  • dep: [r-bioc-s4vectors] (>= 0.17.25)

    BioConductor S4 implementation of vectors and lists

  • dep: [r-bioc-iranges] (>= 2.13.12)

    GNU R low-level containers for storing sets of integer ranges

  • dep: [r-bioc-genomeinfodb]

    BioConductor utilities for manipulating chromosome identifiers

  • dep: [r-bioc-genomicranges] (>= 1.31.8)

    BioConductor representation and manipulation of genomic intervals

  • dep: [r-bioc-genomicalignments] (>= 1.15.6)

    BioConductor representation and manipulation of short genomic alignments

  • dep: [r-bioc-rtracklayer] (>= 1.39.7)

    GNU R interface to genome browsers and their annotation tracks

  • dep: [libc6] (>= 2.4)

    GNU C Library: Shared libraries

Download r-bioc-grohmm

ArchitecturePackage SizeInstalled SizeFiles
amd644.2 MiB4.4 MiB[list of files]
arm644.2 MiB4.4 MiB[list of files]

Package file paths (32)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/lib/R/site-library/groHMM/CITATION
  • /usr/lib/R/site-library/groHMM/DESCRIPTION
  • /usr/lib/R/site-library/groHMM/doc/groHMM.pdf
  • /usr/lib/R/site-library/groHMM/doc/groHMM.R
  • /usr/lib/R/site-library/groHMM/doc/groHMM.Rnw
  • /usr/lib/R/site-library/groHMM/doc/index.html
  • /usr/lib/R/site-library/groHMM/extdata/S0mR1.bam
  • /usr/lib/R/site-library/groHMM/extdata/S40mR1.bam
  • /usr/lib/R/site-library/groHMM/extdata/Vignette.RData
  • /usr/lib/R/site-library/groHMM/help/aliases.rds
  • /usr/lib/R/site-library/groHMM/help/AnIndex
  • /usr/lib/R/site-library/groHMM/help/groHMM.rdb
  • /usr/lib/R/site-library/groHMM/help/groHMM.rdx
  • /usr/lib/R/site-library/groHMM/help/paths.rds
  • /usr/lib/R/site-library/groHMM/html/00Index.html
  • /usr/lib/R/site-library/groHMM/html/R.css
  • /usr/lib/R/site-library/groHMM/INDEX
  • /usr/lib/R/site-library/groHMM/libs/groHMM.so
  • /usr/lib/R/site-library/groHMM/Meta/features.rds
  • /usr/lib/R/site-library/groHMM/Meta/hsearch.rds
  • /usr/lib/R/site-library/groHMM/Meta/links.rds
  • /usr/lib/R/site-library/groHMM/Meta/nsInfo.rds
  • /usr/lib/R/site-library/groHMM/Meta/package.rds
  • /usr/lib/R/site-library/groHMM/Meta/Rd.rds
  • /usr/lib/R/site-library/groHMM/Meta/vignette.rds
  • /usr/lib/R/site-library/groHMM/NAMESPACE
  • /usr/lib/R/site-library/groHMM/NEWS
  • /usr/lib/R/site-library/groHMM/R/groHMM
  • /usr/lib/R/site-library/groHMM/R/groHMM.rdb
  • /usr/lib/R/site-library/groHMM/R/groHMM.rdx
  • /usr/share/doc/r-bioc-grohmm/changelog.Debian.gz
  • /usr/share/doc/r-bioc-grohmm/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Debian 13 (Trixie) in the browserBuild an image that includes r-bioc-grohmm

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.40.3-3trixie / mainamd64Debian 13 · main · amd644.2 MiB4.4 MiBpool/main/r/r-bioc-grohmm/r-bioc-grohmm_1.40.3-3_amd64.deb
1.40.3-3trixie / mainarm64Debian 13 · main · arm644.2 MiB4.4 MiBpool/main/r/r-bioc-grohmm/r-bioc-grohmm_1.40.3-3_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.40.3-3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 069ac81cb4d88747afabdcd627dbfa1398424876b81577153089b3fd6ac1c92f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '069ac81cb4d88747afabdcd627dbfa1398424876b81577153089b3fd6ac1c92f' 'r-bioc-grohmm_1.40.3-3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.40.3-3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 6e431fc02846089f54ea9801d79a7b170917ed6d7d3eecb9f985f231c84105d1

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '6e431fc02846089f54ea9801d79a7b170917ed6d7d3eecb9f985f231c84105d1' 'r-bioc-grohmm_1.40.3-3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 13 (Trixie) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
    Result: match verified

  • Debian 13 (Trixie) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
    Result: match verified

r-bioc-grohmm Package for Debian 13 (Trixie) | OpenFactory