r-bioc-scran

dep: r-api-4.0

Package not available

dep: r-api-bioc-3.20

Package not available

dep: [r-bioc-singlecellexperiment]

S4 Classes for Single Cell Data

dep: [r-bioc-scuttle]

BioConductor single-cell RNA-Seq analysis utilities

dep: [r-bioc-summarizedexperiment]

BioConductor assay container

dep: [r-bioc-s4vectors]

BioConductor S4 implementation of vectors and lists

dep: [r-bioc-biocgenerics]

generic functions for Bioconductor

dep: [r-bioc-biocparallel]

BioConductor facilities for parallel evaluation

dep: [r-cran-rcpp]

GNU R package for Seamless R and C++ Integration

dep: [r-cran-matrix]

GNU R package of classes for dense and sparse matrices

dep: [r-bioc-edger]

Empirical analysis of digital gene expression data in R

dep: [r-bioc-limma]

linear models for microarray data

dep: [r-cran-igraph]

GNU R network analysis and visualization

dep: [r-cran-statmod]

GNU R package providing algorithms and functions for statistical modeling

dep: [r-bioc-matrixgenerics]

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

dep: [r-bioc-s4arrays]

foundation of array-like containers in Bioconductor

dep: [r-bioc-delayedarray]

BioConductor delayed operations on array-like objects

dep: [r-bioc-biocsingular]

Singular Value Decomposition for Bioconductor Packages

dep: [r-bioc-bluster]

Clustering Algorithms for Bioconductor

dep: [r-bioc-metapod]

GNU R meta-analyses on P-Values of differential analyses

dep: [r-cran-dqrng]

GNU R fast pseudo random number generators

dep: [r-bioc-beachmat]

I/O for several formats storing matrix data

dep: [r-cran-bh]

(Virtual) GNU R package to provide BH

dep: [libc6] (>= 2.29)

GNU C Library: Shared libraries

dep: [libgcc-s1] (>= 3.0)

GCC support library

dep: [liblapack3]

Library of linear algebra routines 3 - shared version

dep: liblapack.so.3

Package not available

dep: [libstdc++6] (>= 14)

GNU Standard C++ Library v3

sug: [r-cran-testthat]

GNU R testsuite

sug: [r-bioc-biocstyle]

standard styles for vignettes and other Bioconductor documents

sug: [r-cran-knitr]

GNU R package for dynamic report generation using Literate Programming

sug: [r-cran-rmarkdown]

convert R markdown documents into a variety of formats

sug: [r-bioc-delayedmatrixstats]

Functions on Rows and Columns of 'DelayedMatrix' Objects

sug: [r-bioc-hdf5array]

HDF5 backend for DelayedArray objects

sug: [r-bioc-scrnaseq]

Collection of Public Single-Cell RNA-Seq Datasets

sug: [r-cran-dynamictreecut]

Methods for Detection of Clusters in Hierarchical Clustering

sug: [r-bioc-residualmatrix]

Creating a DelayedMatrix of Regression Residuals

sug: [r-bioc-scaledmatrix]

creating a DelayedMatrix of scaled and centered values using GNU R

sug: [r-bioc-deseq2]

R package for RNA-Seq Differential Expression Analysis

sug: [r-cran-pheatmap]

GNU R package to create pretty heatmaps

sug: [r-bioc-scater]

Single-Cell Analysis Toolkit for Gene Expression Data in R