
CVE catalog
CVE-2026-31970
HTSlib is a library for reading and writing bioinformatics file formats. GZI files are used to index block-compressed GZIP [BGZF] files. In the GZI loading function, `bgzf_index_load_hfile()`, it was
- Severity
- High · CVSS 7.3
CVSS:3.1/AV:L/AC:L/PR:L/UI:R/S:U/C:H/I:H/A:H - Published
- Source
- [NVD] · [CVE record]
- EPSS
- 0.47% · Oct 25, 2026
HTSlib is a library for reading and writing bioinformatics file formats. GZI files are used to index block-compressed GZIP [BGZF] files. In the GZI loading function, `bgzf_index_load_hfile()`, it was possible to trigger an integer overflow, leading to an under- or zero-sized buffer being allocated to store the index. Sixteen zero bytes would then be written to this buffer, and, depending on the result of the overflow the rest of the file may also be loaded into the buffer as well. If the function did attempt to load the data, it would eventually fail due to not reading the expected number of records, and then try to free the overflowed heap buffer. Exploiting this bug causes a heap buffer overflow. If a user opens a file crafted to exploit this issue, it could lead to the program crashing, or overwriting of data and heap structures in ways not expected by the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. The easiest work-around is to discard any `.gzi` index files from untrusted sources, and use the `bgzip -r` option to recreate them.
Vulnerable and fixed packages
Distribution-reported package versions and fixes. These do not depend on matching against the OpenFactory package catalog.
| Distribution | Package | Release | Version | Status |
|---|---|---|---|---|
| Debian | htslib | sid | 1.24-3 | fixed |
| Debian | htslib | forky | 1.24-3 | fixed |
| Debian | htslib | trixie | 1.21+ds-1 | vulnerable |
| Debian | htslib | bookworm | 1.16+ds-3 | vulnerable |
| Cpe | htslib | Not reported | Not reported | vulnerable |
| Cpe | htslib | Not reported | Not reported | unknown |
Fixed-version evidence
| Distribution | Package | Type | Release | Fixed version | Urgency | Origin | Bugs |
|---|---|---|---|---|---|---|---|
| Debian | htslib | source | sid | 1.24-2 | not yet assigned | Not reported | [1131493] |
| Debian | htslib | source | forky | 1.24-2 | not yet assigned | Not reported | [1131493] |
| Debian | htslib | source | trixie | (unfixed) | not yet assigned | Not reported | [1131493] |
| Debian | htslib | source | bookworm | (unfixed) | not yet assigned | Not reported | [1131493] |
Notes
[trixie] htslib: Minor issue [bookworm] htslib: Minor issue
OpenFactory catalog packages
[Debian 12 (Bookworm)]
- [htslib-test]Affected
Source package: [htslib]
Details (2)
1.16+ds-3· all · bookwormAffected
nvd · htslib · debian · bookworm; nvd · htslib · debian · 12
1.16+ds-3· all · bookwormAffected
nvd · htslib · debian · bookworm; nvd · htslib · debian · 12
- [libhts3]Affected
Source package: [htslib]
Details (2)
1.16+ds-3· amd64 · bookwormAffected
nvd · htslib · debian · bookworm; nvd · htslib · debian · 12
1.16+ds-3· arm64 · bookwormAffected
nvd · htslib · debian · bookworm; nvd · htslib · debian · 12
- [libhts-dev]Affected
Source package: [htslib]
Details (2)
1.16+ds-3· amd64 · bookwormAffected
nvd · htslib · debian · bookworm; nvd · htslib · debian · 12
1.16+ds-3· arm64 · bookwormAffected
nvd · htslib · debian · bookworm; nvd · htslib · debian · 12
- [tabix]Affected
Source package: [htslib]
Details (2)
1.16+ds-3· amd64 · bookwormAffected
nvd · htslib · debian · bookworm; nvd · htslib · debian · 12
1.16+ds-3· arm64 · bookwormAffected
nvd · htslib · debian · bookworm; nvd · htslib · debian · 12
[Debian 13 (Trixie)]
- [htslib-test]Affected
Source package: [htslib]
Details (2)
1.21+ds-1· all · trixieAffected
nvd · htslib · debian · 13
1.21+ds-1· all · trixieAffected
nvd · htslib · debian · 13
- [libhts3t64]Affected
Source package: [htslib]
Details (2)
1.21+ds-1· amd64 · trixieAffected
nvd · htslib · debian · 13
1.21+ds-1· arm64 · trixieAffected
nvd · htslib · debian · 13
- [libhts-dev]Affected
Source package: [htslib]
Details (2)
1.21+ds-1· amd64 · trixieAffected
nvd · htslib · debian · 13
1.21+ds-1· arm64 · trixieAffected
nvd · htslib · debian · 13
- [tabix]Affected
Source package: [htslib]
Details (2)
1.21+ds-1· amd64 · trixieAffected
nvd · htslib · debian · 13
1.21+ds-1· arm64 · trixieAffected
nvd · htslib · debian · 13
Observed:
References
- [https://nvd.nist.gov/vuln/detail/CVE-2026-31970]
- [https://osv.dev/vulnerability/DEBIAN-CVE-2026-31970]
- [https://security-tracker.debian.org/tracker/CVE-2026-31970]
- [https://security.access.redhat.com/data/csaf/v2/vex/2026/cve-2026-31970.json]
[Debian Security Tracker] · [FIRST EPSS] · [National Vulnerability Database (NVD)] · [OSV Package Vulnerability Database] · [Red Hat security advisories and VEX]