Packages / Debian 13 (Trixie) / science / roary
Package: roary (3.13.0+dfsg-2)
Maintainers:
External Resources:
Homepage: [sanger-pathogens.github.io]
high speed stand alone pan genome pipeline
Other Packages Related to roary:
dep: [perl] [any]
Larry Wall's Practical Extraction and Report Language
dep: [bioperl] (>= 1.7.4)
Perl tools for computational molecular biology
dep: [libarray-utils-perl]
collection of small utils for array manipulation
dep: [libdigest-md5-file-perl]
Perl extension for getting MD5 sums for files and urls
dep: [libenv-path-perl]
Perl module implementing advanced operations on path variables
dep: [libexception-class-perl]
module that allows you to declare real exception classes in Perl
dep: [libfile-find-rule-perl]
module to search for files based on rules
dep: [libfile-grep-perl]
module for pattern matching in a series of files
dep: [libfile-slurper-perl]
simple, sane and efficient module to slurp a file
dep: [libfile-which-perl]
Perl module for searching paths for executable programs
dep: [libfindbin-libs-perl]
Perl module to use a relative path for lib directories
dep: [libgraph-perl]
Perl module for graph data structures and algorithms
dep: [libgraph-readwrite-perl]
module for reading and writing directed graphs
dep: [liblog-log4perl-perl]
Perl port of the widely popular log4j logging package
dep: [libmoose-perl]
modern Perl object system framework
dep: [libperlio-utf8-strict-perl]
fast and correct UTF-8 Perl IO module
dep: [libtest-most-perl]
Perl module with the most commonly needed test functions and features
dep: [libtest-file-perl]
Perl module to test file attributes
dep: [libtest-files-perl]
module to ease testing with files and directories
dep: [libtest-output-perl]
perl module to test stdout and stderr messages
dep: [libtext-csv-perl]
comma-separated values manipulator (using XS or PurePerl)
dep: [bedtools]
suite of utilities for comparing genomic features
dep: [cd-hit]
suite of programs designed to quickly group sequences
dep: [ncbi-blast+]
next generation suite of BLAST sequence search tools
dep: [mcl]
Markov Cluster algorithm
dep: [parallel]
build and execute command lines from standard input in parallel
dep: [prank]
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
dep: [r-base-core]
GNU R core of statistical computation and graphics system
dep: [r-cran-ggplot2]
implementation of the Grammar of Graphics
dep: [mafft]
Multiple alignment program for amino acid or nucleotide sequences
dep: [fasttree]
phylogenetic trees from alignments of nucleotide or protein sequences
Download roary
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 181 KiB | 732 KiB | [list of files] |
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Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3