Linux workstation

Debian 12 (Bookworm) native package

python3-bcbio

library for analysing high-throughput sequencing data

Packages / Debian 12 (Bookworm) / contrib/python / python3-bcbio

[Source: bcbio]

Package: python3-bcbio (1.2.9-2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [github.com]

library for analysing high-throughput sequencing data

Other Packages Related to python3-bcbio:

  • dep: [python3] [any]

    interactive high-level object-oriented language (default python3 version)

  • dep: [python3-biopython]

    Python3 library for bioinformatics

  • dep: [python3-cyvcf2]

    VCF parser based on htslib (Python 3)

  • dep: [python3-joblib]

    tools to provide lightweight pipelining in Python

  • dep: [python3-logbook]

    logging system for Python that replaces the standard library's module (Python 3)

  • dep: [python3-matplotlib]

    Python based plotting system in a style similar to Matlab (Python 3)

  • dep: [python3-psutil]

    module providing convenience functions for managing processes (Python3)

  • dep: [python3-pysam]

    interface for the SAM/BAM sequence alignment and mapping format (Python 3)

  • dep: [python3-requests]

    elegant and simple HTTP library for Python3, built for human beings

  • dep: [python3-scipy]

    scientific tools for Python 3

  • dep: [python3-six]

    Python 2 and 3 compatibility library

  • dep: [python3-tornado]

    scalable, non-blocking web server and tools - Python 3 package

  • rec: [cnvkit]

    Copy number variant detection from targeted DNA sequencing

  • rec: [gsort]

    sort genomic data

  • rec: [libfreetype6]

    FreeType 2 font engine, shared library files

  • rec: [libhts-dev]

    development files for the HTSlib

  • rec: [lumpy-sv]

    general probabilistic framework for structural variant discovery

  • rec: [mosdepth]

    BAM/CRAM depth calculation biological sequencing

  • rec: [multiqc]

    output integration for RNA sequencing across tools and samples

  • rec: [python3-arrow]

    Python3 library to manipulate dates, times, and timestamps

  • rec: [python3-geneimpacts]

    wraps command line tools to assess variants in gene sequences

  • rec: [python3-h5py]

    general-purpose Python interface to hdf5

  • rec: python3-pyvcf

    Package not available

  • rec: [python3-seqcluster]

    analysis of small RNA in NGS data

  • rec: [python3-statsmodels]

    Python3 module for the estimation of statistical models

  • rec: [python3-tabulate]

    pretty-print tabular data in Python3

  • rec: [r-other-wasabi]

    prepare Sailfish and Salmon output for downstream analysis using GNU R

  • rec: [r-bioc-purecn]

    copy number calling and SNV classification using targeted short read sequencing

  • rec: [r-bioc-titancna]

    Subclonal copy number and LOH prediction from whole genome sequencing

  • rec: [seqan-apps]

    C++ library for the analysis of biological sequences

  • rec: [snpeff]

    genetic variant annotation and effect prediction toolbox - tool

  • rec: [vcfanno]

    annotate a VCF with other VCFs/BEDs/tabixed files

  • rec: [vt]

    toolset for short variant discovery in genetic sequence data

  • sug: bcbio-doc

    Package not available

  • sug: [python3-bioblend]

    CloudMan and Galaxy API library (Python 3)

  • sug: [python3-dnapilib]

    adapter prediction for small RNA sequencing - library

  • sug: [python3-msgpack]

    Python 3 implementation of MessagePack format

Download python3-bcbio

ArchitecturePackage SizeInstalled SizeFiles
all1.2 MiB4.8 MiB[list of files]

Package file paths (0)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

No package-associated file paths were observed for the displayed build metadata.

Field source: Debian 12 (Bookworm) contrib arm64 revision bookworm-contrib-arm64:2c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e95

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.2.9-2bookworm / contriballDebian 12 · contrib · arm641.2 MiB4.8 MiBpool/contrib/b/bcbio/python3-bcbio_1.2.9-2_all.deb
1.2.9-2bookworm / contriballDebian 12 · contrib · amd641.2 MiB4.8 MiBpool/contrib/b/bcbio/python3-bcbio_1.2.9-2_all.deb

Field source: Debian 12 (Bookworm) contrib arm64 revision bookworm-contrib-arm64:2c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e95

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.2.9-2 / allObserved Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e15c19baae6e28a29e4b12bfbddadb6739609e59bdafcfa1701a88cb04404b43

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'e15c19baae6e28a29e4b12bfbddadb6739609e59bdafcfa1701a88cb04404b43' 'python3-bcbio_1.2.9-2_all.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) contrib arm64 revision bookworm-contrib-arm64:2c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e95

1.2.9-2 / allObserved Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e15c19baae6e28a29e4b12bfbddadb6739609e59bdafcfa1701a88cb04404b43

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'e15c19baae6e28a29e4b12bfbddadb6739609e59bdafcfa1701a88cb04404b43' 'python3-bcbio_1.2.9-2_all.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) contrib amd64 revision bookworm-contrib-amd64:0b0cd0be7afe97b48e1f593e40d471cc673c576408d5513b3eee0bae4b28e52f

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
0/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 80/100

Field source: Debian 12 (Bookworm) contrib amd64 revision bookworm-contrib-amd64:0b0cd0be7afe97b48e1f593e40d471cc673c576408d5513b3eee0bae4b28e52f, Debian 12 (Bookworm) contrib arm64 revision bookworm-contrib-arm64:2c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e95. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Authoritative source; repository metadata signature verified, revision bookworm-contrib-amd64:0b0cd0be7afe97b48e1f593e40d471cc673c576408d5513b3eee0bae4b28e52f

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: contrib/binary-amd64/Packages.xz
    Expected SHA-256: 0b0cd0be7afe97b48e1f593e40d471cc673c576408d5513b3eee0bae4b28e52f
    Observed SHA-256: 0b0cd0be7afe97b48e1f593e40d471cc673c576408d5513b3eee0bae4b28e52f
    Result: match verified

  • Authoritative source; repository metadata signature verified, revision bookworm-contrib-arm64:2c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e95

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: contrib/binary-arm64/Packages.xz
    Expected SHA-256: 2c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e95
    Observed SHA-256: 2c8d4d73c617dee3178b63085b037371183a44573c3c0dc929cdfd86e9555e95
    Result: match verified