Debian 12 (Bookworm) native package

q2-dada2

QIIME 2 plugin to work with adapters in sequence data

Packages / Debian 12 (Bookworm) / science / q2-dada2

Package: q2-dada2 (2022.11.2-2)

Maintainers:

Debian Med Packaging Team

External Resources:

Homepage: [qiime2.org]

QIIME 2 plugin to work with adapters in sequence data

Other Packages Related to q2-dada2:

dep: [python3] [any]
interactive high-level object-oriented language (default python3 version)
dep: [r-base-core]
GNU R core of statistical computation and graphics system
dep: [r-bioc-dada2] (>= 1.24.0+dfsg-2~)
sample inference from amplicon sequencing data
dep: [r-cran-optparse]
GNU/R Command line option parser
dep: [qiime] (>= 2022.11.1)
Quantitative Insights Into Microbial Ecology
dep: [q2-types] (>= 2022.11.1)
QIIME 2 plugin defining types for microbiome analysis
dep: [python3-biom-format]
Biological Observation Matrix (BIOM) format (Python 3)
dep: [python3-skbio]
Python3 data structures, algorithms, educational resources for bioinformatic

Download q2-dada2

Architecture	Package Size	Installed Size	Files
amd64	1.7 MiB	2.2 MiB	[list of files]

Package file paths (120)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/bin/run_dada.R
/usr/lib/python3/dist-packages/q2_dada2-2022.11.2.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/q2_dada2-2022.11.2.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/q2_dada2-2022.11.2.egg-info/not-zip-safe
/usr/lib/python3/dist-packages/q2_dada2-2022.11.2.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/q2_dada2-2022.11.2.egg-info/top_level.txt
/usr/lib/python3/dist-packages/q2_dada2/citations.bib
/usr/lib/python3/dist-packages/q2_dada2/_denoise.py
/usr/lib/python3/dist-packages/q2_dada2/_examples.py
/usr/lib/python3/dist-packages/q2_dada2/__init__.py
/usr/lib/python3/dist-packages/q2_dada2/plugin_setup.py
/usr/lib/python3/dist-packages/q2_dada2/_stats.py
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/ccs-default.fasta
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/ccs-default-stats.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/ccs-default.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/paired-default.fasta
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/paired-default-stats.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/paired-default.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/paired-override.fasta
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/paired-override-stats.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/paired-override.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/pyro-default.fasta
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/pyro-default-stats.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/pyro-default.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/single-default.fasta
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/single-default-stats.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/single-default.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/single-override.fasta
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/single-override-stats.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/single-override.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/single-pseudo.fasta
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/single-pseudo-stats.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/single-pseudo.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/stats-format.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/underscore-samples.fasta
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/underscore-samples-stats.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/expected/underscore-samples.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/mixed_barcodes_and_ids/MANIFEST
/usr/lib/python3/dist-packages/q2_dada2/tests/data/mixed_barcodes_and_ids/metadata.yml
/usr/lib/python3/dist-packages/q2_dada2/tests/data/mixed_barcodes_and_ids/V130_166_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/mixed_barcodes_and_ids/V130_2_167_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/mixed_barcodes_and_ids/V130_2_743_L001_R2_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/mixed_barcodes_and_ids/V130_742_L001_R2_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/no_asvs.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_ccs/MANIFEST
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/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_ccs/R3_1_P2C2_2_L001_R1_001.fastq.gz
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/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_ccs/R3_3_P2C2_0_L001_R1_001.fastq.gz
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/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_ccs/R9_1_P2C2_1_L001_R1_001.fastq.gz
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/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_ccs/R9_3_P2C2_4_L001_R1_001.fastq.gz
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/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/BAQ4166.2_21_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/BAQ4166.2_21_L001_R2_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/BAQ4166.3_48_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/BAQ4166.3_48_L001_R2_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/MANIFEST
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/metadata.yml
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/PAP130.2_22_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/PAP130.2_22_L001_R2_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/YUN1005.3_49_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/YUN1005.3_49_L001_R2_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/YUN1242.1_31_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/YUN1242.1_31_L001_R2_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/YUN1242.3_44_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/YUN1242.3_44_L001_R2_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/YUN3153.3_60_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_paired/YUN3153.3_60_L001_R2_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L1S208_10_L001_R1_001.fastq.gz
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/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L1S57_13_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L1S76_12_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L2S155_25_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L2S175_27_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L2S309_33_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L2S357_15_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L3S294_16_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L3S313_32_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L4S112_26_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L4S63_31_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L5S155_2_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L5S174_29_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L6S20_20_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/L6S68_30_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/MANIFEST
/usr/lib/python3/dist-packages/q2_dada2/tests/data/sample_seqs_single/metadata.yml
/usr/lib/python3/dist-packages/q2_dada2/tests/data/single_feature.tsv
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L1_S208_10_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L1_S257_11_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L1_S57_13_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L1_S76_12_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L2_S155_25_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L2_S175_27_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L2_S309_33_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L2_S357_15_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L3_S294_16_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L3_S313_32_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L4_S112_26_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L4_S63_31_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L5_S155_2_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L5_S174_29_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L6_S20_20_L001_R1_001.fastq.gz
/usr/lib/python3/dist-packages/q2_dada2/tests/data/underscore_samples/L6_S68_30_L001_R1_001.fastq.gz
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/usr/lib/python3/dist-packages/q2_dada2/tests/__init__.py
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/usr/lib/python3/dist-packages/q2_dada2/tests/test_stats.py
/usr/lib/python3/dist-packages/q2_dada2/_transformer.py
/usr/lib/python3/dist-packages/q2_dada2/_version.py
/usr/share/doc/q2-dada2/changelog.Debian.gz
/usr/share/doc/q2-dada2/copyright

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2022.11.2-2	bookworm / main	amd64	Debian 12 · main · amd64	1.7 MiB	2.2 MiB	pool/main/q/q2-dada2/q2-dada2_2022.11.2-2_amd64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

2022.11.2-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 2929f96f0e69130da54ed7631f4f372ced4ae0c9f36993da5069355d84964f17

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '2929f96f0e69130da54ed7631f4f372ced4ae0c9f36993da5069355d84964f17' 'q2-dada2_2022.11.2-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified