Debian 12 (Bookworm) native package

r-bioc-oligo

Preprocessing tools for oligonucleotide arrays

Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-oligo

Package: r-bioc-oligo (1.62.2+ds-1)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

Preprocessing tools for oligonucleotide arrays

Other Packages Related to r-bioc-oligo:

dep: [r-base-core] (>= 4.2.2.20221110-2)
GNU R core of statistical computation and graphics system
dep: r-api-4.0
Package not available
dep: r-api-bioc-3.16
Package not available
dep: [r-bioc-biocgenerics] (>= 0.13.11)
generic functions for Bioconductor
dep: [r-bioc-oligoclasses] (>= 1.29.6)
Classes for high-throughput arrays supported by oligo and crlmm
dep: [r-bioc-biobase] (>= 2.27.3)
base functions for Bioconductor
dep: [r-bioc-biostrings] (>= 2.35.12)
GNU R string objects representing biological sequences
dep: [r-bioc-affyio] (>= 1.35.0)
BioConductor tools for parsing Affymetrix data files
dep: [r-bioc-affxparser] (>= 1.39.4)
Affymetrix File Parsing SDK
dep: [r-cran-dbi] (>= 0.3.1)
GNU R package providing a generic database interface
dep: [r-cran-ff]
Memory-Efficient Fast-Access Storage of Large Data
dep: [r-bioc-preprocesscore] (>= 1.29.0)
BioConductor collection of pre-processing functions
dep: [r-cran-rsqlite] (>= 1.0.0)
Database Interface R driver for SQLite
dep: [r-bioc-zlibbioc]
(Virtual) zlibbioc Bioconductor package
dep: [libc6] (>= 2.29)
GNU C Library: Shared libraries
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime

sug: [r-bioc-genefilter]
methods for filtering genes from microarray experiments
sug: [r-bioc-limma]
linear models for microarray data
sug: [r-cran-rcolorbrewer]
GNU R package providing suitable color palettes
sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-runit]
GNU R package providing unit testing framework
sug: [r-bioc-biomart]
GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
sug: [r-bioc-annotationdbi]
GNU R Annotation Database Interface for BioConductor
sug: [r-cran-rcurl]
GNU R General network (HTTP/FTP/...) client interface

Download r-bioc-oligo

Architecture	Package Size	Installed Size	Files
amd64	899 KiB	1.3 MiB	[list of files]
arm64	897 KiB	1.3 MiB	[list of files]

Package file paths (37)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/oligo/CITATION
/usr/lib/R/site-library/oligo/DESCRIPTION
/usr/lib/R/site-library/oligo/doc/index.html
/usr/lib/R/site-library/oligo/doc/oug.Rnw
/usr/lib/R/site-library/oligo/help/aliases.rds
/usr/lib/R/site-library/oligo/help/AnIndex
/usr/lib/R/site-library/oligo/help/oligo.rdb
/usr/lib/R/site-library/oligo/help/oligo.rdx
/usr/lib/R/site-library/oligo/help/paths.rds
/usr/lib/R/site-library/oligo/html/00Index.html
/usr/lib/R/site-library/oligo/html/R.css
/usr/lib/R/site-library/oligo/INDEX
/usr/lib/R/site-library/oligo/libs/oligo.so
/usr/lib/R/site-library/oligo/Meta/features.rds
/usr/lib/R/site-library/oligo/Meta/hsearch.rds
/usr/lib/R/site-library/oligo/Meta/links.rds
/usr/lib/R/site-library/oligo/Meta/nsInfo.rds
/usr/lib/R/site-library/oligo/Meta/package.rds
/usr/lib/R/site-library/oligo/Meta/Rd.rds
/usr/lib/R/site-library/oligo/Meta/vignette.rds
/usr/lib/R/site-library/oligo/NAMESPACE
/usr/lib/R/site-library/oligo/NEWS.Rd
/usr/lib/R/site-library/oligo/R/oligo
/usr/lib/R/site-library/oligo/R/oligo.rdb
/usr/lib/R/site-library/oligo/R/oligo.rdx
/usr/lib/R/site-library/oligo/scripts/FrameworkPreprocessing.bib
/usr/lib/R/site-library/oligo/scripts/getVersions.sh
/usr/lib/R/site-library/oligo/scripts/oligoVignette.bib
/usr/lib/R/site-library/oligo/scripts/oug.Rnw
/usr/lib/R/site-library/oligo/scripts/primer.Rnw
/usr/lib/R/site-library/oligo/unitTests/fids_ref0.rda
/usr/lib/R/site-library/oligo/unitTests/gen_selector0.R
/usr/lib/R/site-library/oligo/unitTests/i0.rda
/usr/lib/R/site-library/oligo/unitTests/rma_ref0.rda
/usr/share/doc/r-bioc-oligo/changelog.Debian.gz
/usr/share/doc/r-bioc-oligo/changelog.gz
/usr/share/doc/r-bioc-oligo/copyright

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.62.2+ds-1	bookworm / main	amd64	Debian 12 · main · amd64	899 KiB	1.3 MiB	pool/main/r/r-bioc-oligo/r-bioc-oligo_1.62.2+ds-1_amd64.deb
1.62.2+ds-1	bookworm / main	arm64	Debian 12 · main · arm64	897 KiB	1.3 MiB	pool/main/r/r-bioc-oligo/r-bioc-oligo_1.62.2+ds-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.62.2+ds-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 01bf16659ec7e6ad0d2cc2e2b6fe513c6e516131bf0b53750eaf9e4e99a45804

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '01bf16659ec7e6ad0d2cc2e2b6fe513c6e516131bf0b53750eaf9e4e99a45804' 'r-bioc-oligo_1.62.2+ds-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.62.2+ds-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 276f2cbe6f551b1c88b82156f8bd2ea7304e352374ff2ed6e1c50dab4eaa9276

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '276f2cbe6f551b1c88b82156f8bd2ea7304e352374ff2ed6e1c50dab4eaa9276' 'r-bioc-oligo_1.62.2+ds-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified