Packages / Fedora 43 / Unspecified / bionetgen-perl

Package: bionetgen-perl (2.9.0-10.fc43)

Perl scripts and Models used by bionetgen

Perl scripts and Models used by bionetgen.

Other Packages Related to bionetgen-perl:

dep: /usr/bin/perl
Package not available
dep: [bionetgen] (= 2.9.0-10.fc43)
Software for rule-based modeling of biochemical systems
dep: perl(Carp)
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dep: perl(Class::Struct)
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dep: perl(Config)
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dep: perl(Cwd)
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dep: perl(Data::Dumper)
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dep: perl(Exporter)
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dep: perl(File::Basename)
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dep: perl(File::Path)
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dep: perl(File::Spec)
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dep: perl(File::Spec::Win32)
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dep: perl(FindBin)
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dep: perl(Getopt::Long)
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dep: perl(IO::Handle)
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dep: perl(IO::Select)
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dep: perl(IPC::Open3)
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dep: perl(List::Util)
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dep: perl(Math::Trig)
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dep: perl(POSIX)
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dep: perl(Scalar::Util)
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dep: perl(Storable)
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dep: perl(Symbol)
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dep: perl(constant)
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dep: perl(lib)
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dep: perl(strict)
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dep: perl(vars)
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dep: perl(warnings)
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dep: [perl-libs]
The libraries for the perl run-time

Download bionetgen-perl

Architecture	Package size	Installed size	Files	Package
noarch	668 KiB	3.1 MiB	list of files	Download

Package file paths (159)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/share/perl5/vendor_perl/BioNetGen
/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl
/usr/share/perl5/vendor_perl/BioNetGen/Models2
/usr/share/perl5/vendor_perl/BioNetGen/Models2/BIOMD0000000010.xml
/usr/share/perl5/vendor_perl/BioNetGen/Models2/blbr.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/ButcherTableau.txt
/usr/share/perl5/vendor_perl/BioNetGen/Models2/CaOscillate_Func.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/CaOscillate_Sat.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/catalysis.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/egfr_net.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/egfr_net_red.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/egfr_path.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/energy_example1.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/EnergyModels
/usr/share/perl5/vendor_perl/BioNetGen/Models2/EnergyModels/energy_example1.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/EnergyModels/Kiefhaber_emodel.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/EnergyModels/mwc.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/EnergyModels/wofsy-goldstein.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/fceri_ji.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_fyn.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_fyn_lig.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_fyn.net
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_fyn_trimer.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_gamma2_asym.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_gamma2.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_ji.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_ji_red.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_lyn_745.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/fceri_trimer.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/FceriModels/MODELS.txt
/usr/share/perl5/vendor_perl/BioNetGen/Models2/gene_expr_func.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/Haugh2b.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/localfunc.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/LV.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/default.geometry.mdl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/fceri_ji.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/fceri_ji_comp.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/fceri_ji_comp.geometry.mdl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/README.pdf
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/rec_dim.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/rec_dim_comp.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/MCell/rec_dim_comp.geometry.mdl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/Motivating_example.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/Motivating_example_cBNGL.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00001.cdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00001.gdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00001.net
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00002.cdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00002.gdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00002.net
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00003.cdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00003.gdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00003.net
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00004.cdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00004.gdat
/usr/share/perl5/vendor_perl/BioNetGen/Models2/nfkb_illustrating_protocols_R/nfkb_illustrating_protocols_R_00004.net
/usr/share/perl5/vendor_perl/BioNetGen/Models2/parameter_scan_with_protocol.ipynb
/usr/share/perl5/vendor_perl/BioNetGen/Models2/partial_dynamical_scaling.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/Repressilator.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_all.pl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/SHP2_base_model.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/simargs.txt
/usr/share/perl5/vendor_perl/BioNetGen/Models2/simple_nfsim.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/simple_sbml_import.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/test_continue.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/test_fixed.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/tlbr.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/toy-jim.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/visualize.bngl
/usr/share/perl5/vendor_perl/BioNetGen/Models2/visualize_opts1.txt
/usr/share/perl5/vendor_perl/BioNetGen/Models2/visualize_opts2.txt
/usr/share/perl5/vendor_perl/BioNetGen/Perl2
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/auto_hpp.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/bnglstat.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/count_blocks.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/countdown.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/count_lines.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/diff_cdat.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/express_main.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/express.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/group_size.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/MakeBin.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/runBNG.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/test_compartment.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/test_molorder.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/test.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/test_redirect.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Aux2/test_sub.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGAction.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGMessages.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGModel.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGOptions.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGOutput.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/BNGUtils.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL/ABC_example.txt
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL/Boolean2BNGL.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Boolean2BNGL/Tcell_model_v16.txt
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Cache.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/CartesianProduct.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/CompartmentList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Compartment.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Component.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/ComponentType.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Console.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/diff_net.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/EnergyPattern.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Expression.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Function.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/HNauty.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/MacroBNG2.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/MacroBNGModel.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Map.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/ModelWrapper.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Molecule.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/MoleculeType.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/MoleculeTypesList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Observable.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/ParamList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Param.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/PopulationList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Population.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/RateLaw.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/RefineRule.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/RxnList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Rxn.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/RxnRule.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/sample_vars_2.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/SBMLMultiAux.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/scan_var.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/SpeciesGraph.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/SpeciesList.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Species.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/test_cartesianproduct.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/verify.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/analyze.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/ContactMap.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/GML.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/NetworkGraph.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/ProcessGraph.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/readGML.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/README
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/RINF.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/StructureGraph.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/VisOptParse.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/visualize.pl
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/Visualization/Viz.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/XML
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/XMLReader.pm
/usr/share/perl5/vendor_perl/BioNetGen/Perl2/XML/TreePP.pm

Field source: Fedora 43 Everything x86_64

Use this package

OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

Try Fedora 43 in the browser Build an image that includes bionetgen-perl

Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
2.9.0-10.fc43	43 / everything	noarch	Fedora 43 · Everything · x86_64	668 KiB	3.1 MiB	Packages/b/bionetgen-perl-2.9.0-10.fc43.noarch.rpm
2.9.0-10.fc43	43 / everything	noarch	Fedora 43 · Everything · aarch64	668 KiB	3.1 MiB	Packages/b/bionetgen-perl-2.9.0-10.fc43.noarch.rpm

Field source: Fedora 43 Everything x86_64

Known vulnerabilities

No matching advisories in the tracked sources.

Last synced: Oct 29, 2026, 9:26:25 PM UTC

[CVE catalog]

Checksums

Repository signatures authenticate metadata. Artifact hashing is recorded separately. Neither establishes package safety.

2.9.0-10.fc43 / noarchObserved Sep 1, 2026sha256 3b7148f99540…b6d643e9Source-reported digest

Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported digest (sha256): 3b7148f99540848ddd5b501388b497c848336ec7028249bd2050734eb6d643e9

Verify download

printf '%s  %s\n' '3b7148f99540848ddd5b501388b497c848336ec7028249bd2050734eb6d643e9' 'bionetgen-perl-2.9.0-10.fc43.noarch.rpm' | sha256sum --check --strict -

Field source: Fedora 43 Everything x86_64

2.9.0-10.fc43 / noarchObserved Sep 1, 2026sha256 3b7148f99540…b6d643e9Source-reported digest

Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported digest (sha256): 3b7148f99540848ddd5b501388b497c848336ec7028249bd2050734eb6d643e9

Verify download

printf '%s  %s\n' '3b7148f99540848ddd5b501388b497c848336ec7028249bd2050734eb6d643e9' 'bionetgen-perl-2.9.0-10.fc43.noarch.rpm' | sha256sum --check --strict -

Field source: Fedora 43 Everything aarch64

Sources

Fedora 43 Everything aarch64Sep 1, 2026
Authoritative source; repository metadata signature verified
Signature evidence
43-everything-aarch64:6431612747d987257399969298151d19cfe87ed26322be6987e7b00cd0ae66a2
Repository-signature verification record
Signed object
https://mirrors.fedoraproject.org/metalink?repo=fedora-43&arch=aarch64
Signed-object SHA-256
6c2a7b7225a6bd12acd5c95dcd0350a0a5929e195692ff68eb31db0ee6b9897b
Keyring revision
RPM-GPG-KEY-fedora-43-primary
SHA-256 2b1449a082d3264dda8e18369f04e9ac4163bf3f8cb530b0783dc2ab064a08ec
Tool and policy
1
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Repository metadata hash linkage
Result
Recorded as verified; digest details unavailable
Fedora 43 Everything x86_64Sep 1, 2026
Authoritative source; repository metadata signature verified
Signature evidence
43-everything-x86_64:eb1d8634a798b5cfcef64b0114711f431f2cd186b55cce902f1883a32c6ff4f2
Repository-signature verification record
Signed object
https://mirrors.fedoraproject.org/metalink?repo=fedora-43&arch=x86_64
Signed-object SHA-256
42c0002750de6066124693fff143f4854c1e29474d893f7e6a7616012d41338f
Keyring revision
RPM-GPG-KEY-fedora-43-primary
SHA-256 2b1449a082d3264dda8e18369f04e9ac4163bf3f8cb530b0783dc2ab064a08ec
Tool and policy
1
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Repository metadata hash linkage
Result
Recorded as verified; digest details unavailable