Debian 13 (Trixie) native package

r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks

Packages / Debian 13 (Trixie) / gnu-r / r-bioc-rtracklayer

Package: r-bioc-rtracklayer (1.66.0-3)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

GNU R interface to genome browsers and their annotation tracks

Other Packages Related to r-bioc-rtracklayer:

dep: r-api-4.0
Package not available
dep: r-api-bioc-3.20
Package not available
dep: [r-bioc-genomicranges] (>= 1.37.2)
BioConductor representation and manipulation of genomic intervals
dep: [r-cran-xml] (>= 1.98-0)
GNU R package for XML parsing and generation
dep: [r-bioc-biocgenerics] (>= 0.35.3)
generic functions for Bioconductor
dep: [r-bioc-s4vectors] (>= 0.23.18)
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-iranges] (>= 2.13.13)
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-xvector] (>= 0.19.7)
BioConductor representation and manpulation of external sequences
dep: [r-bioc-genomeinfodb] (>= 1.15.2)
BioConductor utilities for manipulating chromosome identifiers
dep: [r-bioc-biostrings] (>= 2.47.6)
GNU R string objects representing biological sequences
dep: [r-bioc-zlibbioc]
(Virtual) zlibbioc Bioconductor package
dep: [r-cran-curl]
GNU R modern and flexible web client for R
dep: [r-cran-httr]
GNU R tools for working with URLs and HTTP
dep: [r-bioc-rsamtools] (>= 1.31.2)
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: [r-bioc-genomicalignments] (>= 1.15.6)
BioConductor representation and manipulation of short genomic alignments
dep: [r-bioc-biocio]
standard input and output for Bioconductor packages
dep: [r-cran-restfulr] (>= 0.0.13)
GNU R interface to RESTful web wervices
dep: [libc6] (>= 2.38)
GNU C Library: Shared libraries
dep: [libcurl4t64] (>= 7.16.2)
easy-to-use client-side URL transfer library (OpenSSL flavour)
dep: [libssl3t64] (>= 3.0.0)
Secure Sockets Layer toolkit - shared libraries
dep: [zlib1g] (>= 1:1.1.4)
compression library - runtime

sug: [r-bioc-bsgenome] (>= 1.33.4)
BioConductor infrastructure for Biostrings-based genome data packages
sug: [r-bioc-genefilter]
methods for filtering genes from microarray experiments
sug: [r-bioc-limma]
linear models for microarray data
sug: [r-bioc-org.hs.eg.db]
genome-wide annotation for Human
sug: [r-bioc-genomicfeatures]
GNU R tools for making and manipulating transcript centric annotations
sug: [r-cran-runit]
GNU R package providing unit testing framework

Download r-bioc-rtracklayer

Architecture	Package Size	Installed Size	Files
amd64	5.0 MiB	6.5 MiB	[list of files]
arm64	5.0 MiB	6.6 MiB	[list of files]

Шляхи файлів пакета (81)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/rtracklayer/CITATION
/usr/lib/R/site-library/rtracklayer/data/cpneTrack.rda
/usr/lib/R/site-library/rtracklayer/data/targets.rda
/usr/lib/R/site-library/rtracklayer/demo/targets.R
/usr/lib/R/site-library/rtracklayer/DESCRIPTION
/usr/lib/R/site-library/rtracklayer/doc/index.html
/usr/lib/R/site-library/rtracklayer/doc/rtracklayer.pdf
/usr/lib/R/site-library/rtracklayer/doc/rtracklayer.R
/usr/lib/R/site-library/rtracklayer/doc/rtracklayer.Rnw
/usr/lib/R/site-library/rtracklayer/extdata/demo.narrowPeak.gz
/usr/lib/R/site-library/rtracklayer/help/aliases.rds
/usr/lib/R/site-library/rtracklayer/help/AnIndex
/usr/lib/R/site-library/rtracklayer/help/paths.rds
/usr/lib/R/site-library/rtracklayer/help/rtracklayer.rdb
/usr/lib/R/site-library/rtracklayer/help/rtracklayer.rdx
/usr/lib/R/site-library/rtracklayer/html/00Index.html
/usr/lib/R/site-library/rtracklayer/html/R.css
/usr/lib/R/site-library/rtracklayer/INDEX
/usr/lib/R/site-library/rtracklayer/libs/rtracklayer.so
/usr/lib/R/site-library/rtracklayer/Meta/data.rds
/usr/lib/R/site-library/rtracklayer/Meta/demo.rds
/usr/lib/R/site-library/rtracklayer/Meta/features.rds
/usr/lib/R/site-library/rtracklayer/Meta/hsearch.rds
/usr/lib/R/site-library/rtracklayer/Meta/links.rds
/usr/lib/R/site-library/rtracklayer/Meta/nsInfo.rds
/usr/lib/R/site-library/rtracklayer/Meta/package.rds
/usr/lib/R/site-library/rtracklayer/Meta/Rd.rds
/usr/lib/R/site-library/rtracklayer/Meta/vignette.rds
/usr/lib/R/site-library/rtracklayer/NAMESPACE
/usr/lib/R/site-library/rtracklayer/NEWS
/usr/lib/R/site-library/rtracklayer/notes/design.org
/usr/lib/R/site-library/rtracklayer/notes/requirements.tex
/usr/lib/R/site-library/rtracklayer/notes/use-cases.tex
/usr/lib/R/site-library/rtracklayer/R/rtracklayer
/usr/lib/R/site-library/rtracklayer/R/rtracklayer.rdb
/usr/lib/R/site-library/rtracklayer/R/rtracklayer.rdx
/usr/lib/R/site-library/rtracklayer/scripts/cpneTrack.R
/usr/lib/R/site-library/rtracklayer/scripts/twobit.R
/usr/lib/R/site-library/rtracklayer/tests/bed.bw
/usr/lib/R/site-library/rtracklayer/tests/bed.wig
/usr/lib/R/site-library/rtracklayer/tests/genes.gff3
/usr/lib/R/site-library/rtracklayer/tests/gtf.gff
/usr/lib/R/site-library/rtracklayer/tests/multi.wig
/usr/lib/R/site-library/rtracklayer/tests/quickload/contents.txt
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/annots.xml
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/bedData.bed.gz
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/bedData.bed.gz.tbi
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/bedGraphData.bw
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/mod_chromInfo.txt
/usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/T_species_Oct_2011.2bit
/usr/lib/R/site-library/rtracklayer/tests/step.wig
/usr/lib/R/site-library/rtracklayer/tests/test.2bit
/usr/lib/R/site-library/rtracklayer/tests/test.bb
/usr/lib/R/site-library/rtracklayer/tests/test.bed
/usr/lib/R/site-library/rtracklayer/tests/test.bed15
/usr/lib/R/site-library/rtracklayer/tests/test.bedGraph
/usr/lib/R/site-library/rtracklayer/tests/test.bedpe
/usr/lib/R/site-library/rtracklayer/tests/test.bw
/usr/lib/R/site-library/rtracklayer/tests/test.gtf
/usr/lib/R/site-library/rtracklayer/tests/test.R
/usr/lib/R/site-library/rtracklayer/tests/test.xmfa
/usr/lib/R/site-library/rtracklayer/tests/trackhub/genomes.txt
/usr/lib/R/site-library/rtracklayer/tests/trackhub/hg19/trackDb.txt
/usr/lib/R/site-library/rtracklayer/tests/trackhub/hg19/wgEncodeUWDukeDnaseGM12878.fdr01peaks.hg19.bb
/usr/lib/R/site-library/rtracklayer/tests/trackhub/hub.txt
/usr/lib/R/site-library/rtracklayer/tests/v1.gff
/usr/lib/R/site-library/rtracklayer/tests/v2.gff
/usr/lib/R/site-library/rtracklayer/tests/v3.gff
/usr/lib/R/site-library/rtracklayer/tests/variableStep.bw
/usr/lib/R/site-library/rtracklayer/tests/variableStep.wig
/usr/lib/R/site-library/rtracklayer/unitTests/test_bb.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_bedGraph.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_bed.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_bw.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_gff.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_trackhub.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_twoBit.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_ucsc.R
/usr/lib/R/site-library/rtracklayer/unitTests/test_wig.R
/usr/share/doc/r-bioc-rtracklayer/changelog.Debian.gz
/usr/share/doc/r-bioc-rtracklayer/copyright

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 13 (Trixie) у браузері Зібрати образ, що містить r-bioc-rtracklayer

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.66.0-3	trixie / main	amd64	Debian 13 · main · amd64	5.0 MiB	6.5 MiB	pool/main/r/r-bioc-rtracklayer/r-bioc-rtracklayer_1.66.0-3_amd64.deb
1.66.0-3	trixie / main	arm64	Debian 13 · main · arm64	5.0 MiB	6.6 MiB	pool/main/r/r-bioc-rtracklayer/r-bioc-rtracklayer_1.66.0-3_arm64.deb

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.66.0-3 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 853ca317e6da065cec9a46401667c7f8b48654f9b5570e2d5cc5491b0006882f

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '853ca317e6da065cec9a46401667c7f8b48654f9b5570e2d5cc5491b0006882f' 'r-bioc-rtracklayer_1.66.0-3_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3

1.66.0-3 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: b23f9d9ee54719e1ca671e0ce98b97671a83edcde71d251c75cedfb7d4262aad

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' 'b23f9d9ee54719e1ca671e0ce98b97671a83edcde71d251c75cedfb7d4262aad' 'r-bioc-rtracklayer_1.66.0-3_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3, Debian 13 (Trixie) main arm64 revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 13 (Trixie) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Observed SHA-256: 3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3
Result: match verified
Debian 13 (Trixie) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision trixie-main-arm64:753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/trixie/InRelease
Signed-object SHA-256
98b25b5cd185c59d34aa6e4c3e9b5b8f01bbe9d104fe2dcfbcd30dc0a14a59ed
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Observed SHA-256: 753da751bbc7a679f48bd1b623ffd4479cb6861c426118284c76eb82909e4908
Result: match verified