Packages / Debian 13 (Trixie) / gnu-r / r-bioc-ensembldb
Package: r-bioc-ensembldb (2.30.0+dfsg-3)
Maintainers:
External Resources:
Homepage: [bioconductor.org]
GNU R utilities to create and use an Ensembl based annotation database
Other Packages Related to r-bioc-ensembldb:
dep: r-api-4.0
Package not available
dep: r-api-bioc-3.20
Package not available
dep: [r-bioc-biocgenerics] (>= 0.15.10)
generic functions for Bioconductor
dep: [r-bioc-genomicranges] (>= 1.31.18)
BioConductor representation and manipulation of genomic intervals
dep: [r-bioc-genomicfeatures] (>= 1.49.6)
GNU R tools for making and manipulating transcript centric annotations
dep: [r-bioc-annotationfilter] (>= 1.5.2)
facilities for filtering Bioconductor annotation resources
dep: [r-cran-rsqlite] (>= 1.1)
Database Interface R driver for SQLite
dep: [r-cran-dbi]
GNU R package providing a generic database interface
dep: [r-bioc-biobase]
base functions for Bioconductor
dep: [r-bioc-genomeinfodb]
BioConductor utilities for manipulating chromosome identifiers
dep: [r-bioc-annotationdbi] (>= 1.31.19)
GNU R Annotation Database Interface for BioConductor
dep: [r-bioc-rtracklayer]
GNU R interface to genome browsers and their annotation tracks
dep: [r-bioc-s4vectors] (>= 0.23.10)
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-rsamtools]
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: [r-bioc-iranges] (>= 2.13.24)
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-protgenerics]
S4 generic functions for Bioconductor proteomics infrastructure
dep: [r-bioc-biostrings] (>= 2.47.9)
GNU R string objects representing biological sequences
dep: [r-cran-curl]
GNU R modern and flexible web client for R
sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-testthat]
GNU R testsuite
sug: [r-bioc-ggbio] (>= 1.24.0)
Visualization tools for genomic data
sug: [r-bioc-gviz] (>= 1.20.0)
Plotting data and annotation information along genomic coordinates
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
sug: [r-bioc-annotationhub]
GNU R client to access AnnotationHub resources
Download r-bioc-ensembldb
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 1.4 MiB | 2.3 MiB | [list of files] |
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Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3