Packages / Debian 13 (Trixie) / gnu-r / r-bioc-purecn
Package: r-bioc-purecn (2.12.0+dfsg-2)
Maintainers:
External Resources:
Homepage: [bioconductor.org]
copy number calling and SNV classification using targeted short read sequencing
Other Packages Related to r-bioc-purecn:
dep: r-api-4.0
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dep: r-api-bioc-3.20
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dep: [r-bioc-dnacopy]
R package: DNA copy number data analysis
dep: [r-bioc-variantannotation] (>= 1.14.1)
BioConductor annotation of genetic variants
dep: [r-bioc-genomicranges] (>= 1.20.3)
BioConductor representation and manipulation of genomic intervals
dep: [r-bioc-iranges] (>= 2.2.1)
GNU R low-level containers for storing sets of integer ranges
dep: [r-cran-rcolorbrewer]
GNU R package providing suitable color palettes
dep: [r-bioc-s4vectors]
BioConductor S4 implementation of vectors and lists
dep: [r-cran-data.table]
GNU R extension of Data.frame
dep: [r-bioc-summarizedexperiment]
BioConductor assay container
dep: [r-bioc-genomeinfodb]
BioConductor utilities for manipulating chromosome identifiers
dep: [r-bioc-genomicfeatures]
GNU R tools for making and manipulating transcript centric annotations
dep: [r-bioc-rsamtools]
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: [r-bioc-biobase]
base functions for Bioconductor
dep: [r-bioc-biostrings]
GNU R string objects representing biological sequences
dep: [r-bioc-biocgenerics]
generic functions for Bioconductor
dep: [r-bioc-rtracklayer]
GNU R interface to genome browsers and their annotation tracks
dep: [r-cran-ggplot2]
implementation of the Grammar of Graphics
dep: [r-cran-gridextra]
GNU R package with extensions for the grid package
dep: [r-cran-futile.logger]
logging utility for GNU R
dep: [r-cran-vgam]
GNU R package for estimating vector generalized additive models
dep: [r-cran-mclust]
Gaussian Mixture Modelling for Model-Based Clustering
dep: [r-bioc-rhdf5]
BioConductor HDF5 interface to R
dep: [r-cran-matrix]
GNU R package of classes for dense and sparse matrices
sug: [r-bioc-biocparallel]
BioConductor facilities for parallel evaluation
sug: [r-bioc-biocstyle]
standard styles for vignettes and other Bioconductor documents
sug: [r-cran-pscbs]
R package: Analysis of Parent-Specific DNA Copy Numbers
sug: [r-cran-r.utils]
GNU R various programming utilities
sug: [r-cran-covr]
test coverage for GNU R packages
sug: [r-cran-knitr]
GNU R package for dynamic report generation using Literate Programming
sug: [r-cran-optparse]
GNU/R Command line option parser
sug: [r-bioc-org.hs.eg.db]
genome-wide annotation for Human
sug: [r-cran-jsonlite]
Robust, High Performance JSON Parser and Generator for R
sug: [r-cran-markdown]
GNU R package providing R bindings to the Sundown Markdown rendering library
sug: [r-cran-rmarkdown]
convert R markdown documents into a variety of formats
sug: [r-cran-testthat]
GNU R testsuite
Download r-bioc-purecn
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 5.7 MiB | 6.8 MiB | [list of files] |
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Field source: Debian 13 (Trixie) main amd64 revision trixie-main-amd64:3ab4e811cf4f3e5a335d382c58cc19d85f1abe7a4ef4689160ca1f637fa0e9b3