r-bioc-variantannotation

dep: r-api-4.0

Package not available

dep: r-api-bioc-3.20

Package not available

dep: [r-bioc-biocgenerics] (>= 0.37.0)

generic functions for Bioconductor

dep: [r-bioc-matrixgenerics]

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

dep: [r-bioc-genomeinfodb] (>= 1.15.2)

BioConductor utilities for manipulating chromosome identifiers

dep: [r-bioc-genomicranges] (>= 1.41.5)

BioConductor representation and manipulation of genomic intervals

dep: [r-bioc-summarizedexperiment] (>= 1.19.5)

BioConductor assay container

dep: [r-bioc-rsamtools] (>= 2.19.1)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

dep: [r-cran-dbi]

GNU R package providing a generic database interface

dep: [r-bioc-zlibbioc]

(Virtual) zlibbioc Bioconductor package

dep: [r-bioc-biobase]

base functions for Bioconductor

dep: [r-bioc-s4vectors] (>= 0.27.12)

BioConductor S4 implementation of vectors and lists

dep: [r-bioc-iranges] (>= 2.23.9)

GNU R low-level containers for storing sets of integer ranges

dep: [r-bioc-xvector] (>= 0.29.2)

BioConductor representation and manpulation of external sequences

dep: [r-bioc-biostrings] (>= 2.57.2)

GNU R string objects representing biological sequences

dep: [r-bioc-annotationdbi] (>= 1.27.9)

GNU R Annotation Database Interface for BioConductor

dep: [r-bioc-rtracklayer] (>= 1.39.7)

GNU R interface to genome browsers and their annotation tracks

dep: [r-bioc-bsgenome] (>= 1.47.3)

BioConductor infrastructure for Biostrings-based genome data packages

dep: [r-bioc-genomicfeatures] (>= 1.31.3)

GNU R tools for making and manipulating transcript centric annotations

dep: [r-bioc-rhtslib] (>= 2.99.0)

HTSlib high-throughput sequencing library as GNU R package

dep: [libbz2-1.0]

high-quality block-sorting file compressor library - runtime

dep: [libc6] (>= 2.34)

GNU C Library: Shared libraries

dep: [libcurl4t64] (>= 7.18.0)

easy-to-use client-side URL transfer library (OpenSSL flavour)

dep: [liblzma5] (>= 5.1.1alpha+20120614)

XZ-format compression library

dep: [zlib1g] (>= 1:1.2.3.3)

compression library - runtime

sug: [r-cran-runit]

GNU R package providing unit testing framework

sug: [r-bioc-annotationhub]

GNU R client to access AnnotationHub resources

sug: [r-bioc-snpstats]

BioConductor SnpMatrix and XSnpMatrix classes and methods

sug: [r-cran-ggplot2]

implementation of the Grammar of Graphics

sug: [r-bioc-biocstyle]

standard styles for vignettes and other Bioconductor documents

sug: [r-cran-knitr]

GNU R package for dynamic report generation using Literate Programming

sug: [r-cran-magick]

advanced graphics and image-processing in GNU R

sug: [r-cran-jsonlite]

Robust, High Performance JSON Parser and Generator for R

sug: [r-cran-httr]

GNU R tools for working with URLs and HTTP