Linux workstation

Debian 12 (Bookworm) native package

r-bioc-cner

CNE Detection and Visualization

Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-cner

Package: r-bioc-cner (1.34.0+dfsg-1)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

CNE Detection and Visualization

Other Packages Related to r-bioc-cner:

  • dep: [r-base-core] (>= 4.2.2.20221110-1)

    GNU R core of statistical computation and graphics system

  • dep: r-api-4.0

    Package not available

  • dep: r-api-bioc-3.16

    Package not available

  • dep: [r-bioc-biostrings] (>= 2.33.4)

    GNU R string objects representing biological sequences

  • dep: [r-cran-dbi] (>= 0.7)

    GNU R package providing a generic database interface

  • dep: [r-cran-rsqlite] (>= 0.11.4)

    Database Interface R driver for SQLite

  • dep: [r-bioc-genomeinfodb] (>= 1.1.3)

    BioConductor utilities for manipulating chromosome identifiers

  • dep: [r-bioc-genomicranges] (>= 1.23.16)

    BioConductor representation and manipulation of genomic intervals

  • dep: [r-bioc-rtracklayer] (>= 1.25.5)

    GNU R interface to genome browsers and their annotation tracks

  • dep: [r-bioc-xvector] (>= 0.5.4)

    BioConductor representation and manpulation of external sequences

  • dep: [r-bioc-genomicalignments] (>= 1.1.9)

    BioConductor representation and manipulation of short genomic alignments

  • dep: [r-bioc-s4vectors] (>= 0.13.13)

    BioConductor S4 implementation of vectors and lists

  • dep: [r-bioc-iranges] (>= 2.5.27)

    GNU R low-level containers for storing sets of integer ranges

  • dep: [r-cran-readr] (>= 0.2.2)

    GNU R package to read rectangular text data

  • dep: [r-bioc-biocgenerics]

    generic functions for Bioconductor

  • dep: [r-cran-reshape2] (>= 1.4.1)

    Flexibly reshape data: a reboot of the reshape package

  • dep: [r-cran-ggplot2] (>= 2.1.0)

    implementation of the Grammar of Graphics

  • dep: [r-cran-powerlaw] (>= 0.60.3)

    GNU R analysis of heavy tailed distributions

  • dep: [r-bioc-annotate] (>= 1.50.0)

    BioConductor annotation for microarrays

  • dep: [r-bioc-go.db] (>= 3.3.0)

    annotation maps describing the entire Gene Ontology

  • dep: [r-cran-r.utils] (>= 2.3.0)

    GNU R various programming utilities

  • dep: [r-bioc-keggrest] (>= 1.14.0)

    GNU R client-side REST access to KEGG

  • dep: [libc6] (>= 2.33)

    GNU C Library: Shared libraries

  • sug: [r-bioc-gviz] (>= 1.7.4)

    Plotting data and annotation information along genomic coordinates

  • sug: [r-bioc-biocstyle]

    standard styles for vignettes and other Bioconductor documents

  • sug: [r-cran-knitr]

    GNU R package for dynamic report generation using Literate Programming

  • sug: [r-cran-rmarkdown]

    convert R markdown documents into a variety of formats

  • sug: [r-cran-testthat]

    GNU R testsuite

Download r-bioc-cner

ArchitecturePackage SizeInstalled SizeFiles
amd648.0 MiB18 MiB[list of files]
arm648.0 MiB18 MiB[list of files]

Chemins de fichiers du paquet (60)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/lib/R/site-library/CNEr/CITATION
  • /usr/lib/R/site-library/CNEr/data/axisTrack.rda
  • /usr/lib/R/site-library/CNEr/data/CNEDanRer10Hg38.rda
  • /usr/lib/R/site-library/CNEr/data/cneFinalListDanRer10Hg38.rda
  • /usr/lib/R/site-library/CNEr/data/CNEHg38DanRer10.rda
  • /usr/lib/R/site-library/CNEr/data/cpgIslands.rda
  • /usr/lib/R/site-library/CNEr/data/grangesPairsForDotplot.rda
  • /usr/lib/R/site-library/CNEr/data/refGenes.rda
  • /usr/lib/R/site-library/CNEr/DESCRIPTION
  • /usr/lib/R/site-library/CNEr/doc/CNEr.R
  • /usr/lib/R/site-library/CNEr/doc/CNEr.Rmd
  • /usr/lib/R/site-library/CNEr/doc/index.html
  • /usr/lib/R/site-library/CNEr/doc/PairwiseWholeGenomeAlignment.R
  • /usr/lib/R/site-library/CNEr/doc/PairwiseWholeGenomeAlignment.Rmd
  • /usr/lib/R/site-library/CNEr/extdata/chr4.hg19.galGal3.net.axt.gz
  • /usr/lib/R/site-library/CNEr/extdata/cne2wBf_AstMex102_danRer10_48_50
  • /usr/lib/R/site-library/CNEr/extdata/cne2wBf_cteIde1_danRer10_100_100
  • /usr/lib/R/site-library/CNEr/extdata/cne2wBf_cypCar1_danRer10_100_100
  • /usr/lib/R/site-library/CNEr/extdata/cne2wBf_danRer10_hg38_45_50
  • /usr/lib/R/site-library/CNEr/extdata/danRer10CNE.sqlite
  • /usr/lib/R/site-library/CNEr/extdata/danRer10.hg38.net.axt
  • /usr/lib/R/site-library/CNEr/extdata/filter_regions.danRer10.bed
  • /usr/lib/R/site-library/CNEr/extdata/filter_regions.hg38.bed
  • /usr/lib/R/site-library/CNEr/extdata/hg38.danRer10.net.axt
  • /usr/lib/R/site-library/CNEr/extdata/rmsk.fa
  • /usr/lib/R/site-library/CNEr/help/aliases.rds
  • /usr/lib/R/site-library/CNEr/help/AnIndex
  • /usr/lib/R/site-library/CNEr/help/CNEr.rdb
  • /usr/lib/R/site-library/CNEr/help/CNEr.rdx
  • /usr/lib/R/site-library/CNEr/help/paths.rds
  • /usr/lib/R/site-library/CNEr/html/00Index.html
  • /usr/lib/R/site-library/CNEr/html/R.css
  • /usr/lib/R/site-library/CNEr/INDEX
  • /usr/lib/R/site-library/CNEr/libs/CNEr.so
  • /usr/lib/R/site-library/CNEr/Meta/data.rds
  • /usr/lib/R/site-library/CNEr/Meta/features.rds
  • /usr/lib/R/site-library/CNEr/Meta/hsearch.rds
  • /usr/lib/R/site-library/CNEr/Meta/links.rds
  • /usr/lib/R/site-library/CNEr/Meta/nsInfo.rds
  • /usr/lib/R/site-library/CNEr/Meta/package.rds
  • /usr/lib/R/site-library/CNEr/Meta/Rd.rds
  • /usr/lib/R/site-library/CNEr/Meta/vignette.rds
  • /usr/lib/R/site-library/CNEr/NAMESPACE
  • /usr/lib/R/site-library/CNEr/NEWS
  • /usr/lib/R/site-library/CNEr/obsolete/alignment.c
  • /usr/lib/R/site-library/CNEr/obsolete/ceScan.r
  • /usr/lib/R/site-library/CNEr/obsolete/ceScanR.r
  • /usr/lib/R/site-library/CNEr/obsolete/class.r
  • /usr/lib/R/site-library/CNEr/obsolete/CNEr.Rnw
  • /usr/lib/R/site-library/CNEr/obsolete/src/ceScanBranch1.c
  • /usr/lib/R/site-library/CNEr/obsolete/src/ceScanBranch2.c
  • /usr/lib/R/site-library/CNEr/obsolete/src/ceScan.c
  • /usr/lib/R/site-library/CNEr/obsolete/src/compile
  • /usr/lib/R/site-library/CNEr/R/CNEr
  • /usr/lib/R/site-library/CNEr/R/CNEr.rdb
  • /usr/lib/R/site-library/CNEr/R/CNEr.rdx
  • /usr/lib/R/site-library/CNEr/scripts/danRer10Pipeline.R
  • /usr/lib/R/site-library/CNEr/scripts/prepareData.R
  • /usr/share/doc/r-bioc-cner/changelog.Debian.gz
  • /usr/share/doc/r-bioc-cner/copyright

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Utiliser ce paquet

OpenFactory peut démarrer ce système d'exploitation dans une machine virtuelle du navigateur, ou lancer une construction qui inclut le nom natif du paquet de cet enregistrement.

Essayer Debian 12 (Bookworm) dans le navigateurConstruire une image qui inclut r-bioc-cner

Versions, suites et dépôts

Chaque ligne est une métadonnée d'index pour une version, une architecture, une suite et un dépôt. Noms, URL et tailles viennent de la source ; un lien est un emplacement de récupération mutable, pas une redistribution OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.34.0+dfsg-1bookworm / mainamd64Debian 12 · main · amd648.0 MiB18 MiBpool/main/r/r-bioc-cner/r-bioc-cner_1.34.0+dfsg-1_amd64.deb
1.34.0+dfsg-1bookworm / mainarm64Debian 12 · main · arm648.0 MiB18 MiBpool/main/r/r-bioc-cner/r-bioc-cner_1.34.0+dfsg-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Empreintes et dates d'observation

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.34.0+dfsg-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 8dde1bfc5e9ea74e776cb379a74e46aaf0d0afea575476bda86cca9610646661

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' '8dde1bfc5e9ea74e776cb379a74e46aaf0d0afea575476bda86cca9610646661' 'r-bioc-cner_1.34.0+dfsg-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.34.0+dfsg-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: e24267cabfcd128be61418fd3946ff2b42d8a71df84ed232e6317d77c94bd84d

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'e24267cabfcd128be61418fd3946ff2b42d8a71df84ed232e6317d77c94bd84d' 'r-bioc-cner_1.34.0+dfsg-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Complétude de la fiche

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources et provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified

r-bioc-cner Package for Debian 12 (Bookworm) | OpenFactory