Linux workstation

Debian 12 (Bookworm) native package

r-bioc-tfbstools

GNU R Transcription Factor Binding Site (TFBS) Analysis

Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-tfbstools

Package: r-bioc-tfbstools (1.36.0+dfsg-2)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

GNU R Transcription Factor Binding Site (TFBS) Analysis

Other Packages Related to r-bioc-tfbstools:

  • dep: [r-base-core] (>= 4.2.2.20221110-1)

    GNU R core of statistical computation and graphics system

  • dep: r-api-4.0

    Package not available

  • dep: r-api-bioc-3.16

    Package not available

  • dep: [r-bioc-biobase] (>= 2.28)

    base functions for Bioconductor

  • dep: [r-bioc-biostrings] (>= 2.36.4)

    GNU R string objects representing biological sequences

  • dep: [r-bioc-biocgenerics] (>= 0.14.0)

    generic functions for Bioconductor

  • dep: [r-bioc-biocparallel] (>= 1.2.21)

    BioConductor facilities for parallel evaluation

  • dep: [r-bioc-bsgenome] (>= 1.36.3)

    BioConductor infrastructure for Biostrings-based genome data packages

  • dep: [r-cran-catools] (>= 1.17.1)

    GNU R package providing various utility functions

  • dep: [r-bioc-cner] (>= 1.4.0)

    CNE Detection and Visualization

  • dep: [r-bioc-dirichletmultinomial] (>= 1.10.0)

    Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

  • dep: [r-bioc-genomeinfodb] (>= 1.6.1)

    BioConductor utilities for manipulating chromosome identifiers

  • dep: [r-bioc-genomicranges] (>= 1.20.6)

    BioConductor representation and manipulation of genomic intervals

  • dep: [r-cran-gtools] (>= 3.5.0)

    GNU R package with R programming tools by Greg Warnes et al

  • dep: [r-bioc-iranges] (>= 2.2.7)

    GNU R low-level containers for storing sets of integer ranges

  • dep: [r-cran-dbi] (>= 0.6)

    GNU R package providing a generic database interface

  • dep: [r-cran-rsqlite] (>= 1.0.0)

    Database Interface R driver for SQLite

  • dep: [r-bioc-rtracklayer] (>= 1.28.10)

    GNU R interface to genome browsers and their annotation tracks

  • dep: [r-bioc-seqlogo] (>= 1.34.0)

    GNU R sequence logos for DNA sequence alignments

  • dep: [r-bioc-s4vectors] (>= 0.9.25)

    BioConductor S4 implementation of vectors and lists

  • dep: [r-cran-tfmpvalue] (>= 0.0.5)

    GNU R P-Value Computation for Position Weight Matrices

  • dep: [r-cran-xml] (>= 3.98-1.3)

    GNU R package for XML parsing and generation

  • dep: [r-bioc-xvector] (>= 0.8.0)

    BioConductor representation and manpulation of external sequences

  • dep: [libc6] (>= 2.4)

    GNU C Library: Shared libraries

  • sug: [r-bioc-biocstyle] (>= 1.7.7)

    standard styles for vignettes and other Bioconductor documents

  • sug: [r-cran-knitr] (>= 1.11)

    GNU R package for dynamic report generation using Literate Programming

  • sug: [r-cran-testthat]

    GNU R testsuite

  • sug: [r-cran-rmarkdown]

    convert R markdown documents into a variety of formats

Download r-bioc-tfbstools

ArchitecturePackage SizeInstalled SizeFiles
amd64988 KiB1.8 MiB[list of files]
arm64987 KiB1.9 MiB[list of files]

Шляхи файлів пакета (45)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

  • /usr/lib/R/site-library/TFBSTools/CITATION
  • /usr/lib/R/site-library/TFBSTools/data/Rdata.rdb
  • /usr/lib/R/site-library/TFBSTools/data/Rdata.rds
  • /usr/lib/R/site-library/TFBSTools/data/Rdata.rdx
  • /usr/lib/R/site-library/TFBSTools/DESCRIPTION
  • /usr/lib/R/site-library/TFBSTools/doc/index.html
  • /usr/lib/R/site-library/TFBSTools/doc/TFBSTools.R
  • /usr/lib/R/site-library/TFBSTools/doc/TFBSTools.Rmd
  • /usr/lib/R/site-library/TFBSTools/extdata/crp0.s
  • /usr/lib/R/site-library/TFBSTools/extdata/hg19.danRer7.net.axt
  • /usr/lib/R/site-library/TFBSTools/extdata/MA0001.1.pfm
  • /usr/lib/R/site-library/TFBSTools/extdata/meme.output
  • /usr/lib/R/site-library/TFBSTools/extdata/pfm_all_example.txt
  • /usr/lib/R/site-library/TFBSTools/extdata/tffm_detailed.xml
  • /usr/lib/R/site-library/TFBSTools/extdata/tffm_first_order.xml
  • /usr/lib/R/site-library/TFBSTools/help/aliases.rds
  • /usr/lib/R/site-library/TFBSTools/help/AnIndex
  • /usr/lib/R/site-library/TFBSTools/help/paths.rds
  • /usr/lib/R/site-library/TFBSTools/help/TFBSTools.rdb
  • /usr/lib/R/site-library/TFBSTools/help/TFBSTools.rdx
  • /usr/lib/R/site-library/TFBSTools/html/00Index.html
  • /usr/lib/R/site-library/TFBSTools/html/R.css
  • /usr/lib/R/site-library/TFBSTools/INDEX
  • /usr/lib/R/site-library/TFBSTools/libs/TFBSTools.so
  • /usr/lib/R/site-library/TFBSTools/Meta/data.rds
  • /usr/lib/R/site-library/TFBSTools/Meta/features.rds
  • /usr/lib/R/site-library/TFBSTools/Meta/hsearch.rds
  • /usr/lib/R/site-library/TFBSTools/Meta/links.rds
  • /usr/lib/R/site-library/TFBSTools/Meta/nsInfo.rds
  • /usr/lib/R/site-library/TFBSTools/Meta/package.rds
  • /usr/lib/R/site-library/TFBSTools/Meta/Rd.rds
  • /usr/lib/R/site-library/TFBSTools/Meta/vignette.rds
  • /usr/lib/R/site-library/TFBSTools/NAMESPACE
  • /usr/lib/R/site-library/TFBSTools/NEWS
  • /usr/lib/R/site-library/TFBSTools/obsolete/matrixAligner.c
  • /usr/lib/R/site-library/TFBSTools/obsolete/PairwiseAlignmentTFBS-class.Rd
  • /usr/lib/R/site-library/TFBSTools/obsolete/TFBSTools.Rnw
  • /usr/lib/R/site-library/TFBSTools/R/TFBSTools
  • /usr/lib/R/site-library/TFBSTools/R/TFBSTools.rdb
  • /usr/lib/R/site-library/TFBSTools/R/TFBSTools.rdx
  • /usr/lib/R/site-library/TFBSTools/TFBSToolsBuild/build2.R
  • /usr/lib/R/site-library/TFBSTools/TFBSToolsBuild/build.r
  • /usr/lib/R/site-library/TFBSTools/TFBSToolsBuild/timing.R
  • /usr/share/doc/r-bioc-tfbstools/changelog.Debian.gz
  • /usr/share/doc/r-bioc-tfbstools/copyright

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Використати цей пакет

OpenFactory може завантажити цю операційну систему у віртуальній машині браузера або почати збірку образу з рідною назвою пакета з цього запису.

Спробувати Debian 12 (Bookworm) у браузеріЗібрати образ, що містить r-bioc-tfbstools

Версії, набори та репозиторії

Кожен рядок: метадані індексу пакетів для однієї версії, архітектури, набору й репозиторію. Назви, URL і розміри зі джерела; посилання є змінним місцем отримання, не перерозповсюдженням OpenFactory.

VersionReleaseArchitectureRepositoryPackage sizeInstalled sizePublisher repository artifact
1.36.0+dfsg-2bookworm / mainamd64Debian 12 · main · amd64988 KiB1.8 MiBpool/main/r/r-bioc-tfbstools/r-bioc-tfbstools_1.36.0+dfsg-2_amd64.deb
1.36.0+dfsg-2bookworm / mainarm64Debian 12 · main · arm64987 KiB1.9 MiBpool/main/r/r-bioc-tfbstools/r-bioc-tfbstools_1.36.0+dfsg-2_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Контрольні суми й дати спостереження

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.36.0+dfsg-2 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: c16509b3c68091896409640ee7868b53a1839b4db9195d06f7143f5e14707eb9

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'c16509b3c68091896409640ee7868b53a1839b4db9195d06f7143f5e14707eb9' 'r-bioc-tfbstools_1.36.0+dfsg-2_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.36.0+dfsg-2 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: c087f640f3477057c817608e207204ff034a4c4a184dfe5e2277db9ad117608d

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s %s\n' 'c087f640f3477057c817608e207204ff034a4c4a184dfe5e2277db9ad117608d' 'r-bioc-tfbstools_1.36.0+dfsg-2_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Повнота запису каталогу

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description
25/25
Artifact path and source digest
25/25
Dependency metadata
15/15
Package-file index
15/15
Homepage
5/5
License text
0/5
Source package or maintainer
10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Джерела та походження

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

  • Debian 12 (Bookworm) main amd64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-amd64/Packages.xz
    Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
    Result: match verified

  • Debian 12 (Bookworm) main arm64Sep 1, 2026

    Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

    Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.

    Repository-signature verification record
    Signed-object SHA-256
    77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
    Signer fingerprint
    4CB50190207B4758A3F73A796ED0E7B82643E131
    Keyring revision
    debian-archive-keyring.gpg
    SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
    Tool and policy
    gpgv (GnuPG) 2.4.9
    openfactory-software-catalog-signature-v1
    Verification time
    Sep 1, 2026
    Signed Release → package-index hash linkage

    Path: main/binary-arm64/Packages.xz
    Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
    Result: match verified

r-bioc-tfbstools Package for Debian 12 (Bookworm) | OpenFactory